View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14911_low_2 (Length: 312)
Name: NF14911_low_2
Description: NF14911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14911_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 3373732 - 3374011
Alignment:
| Q |
19 |
attttgcacacatgtaggtcaaatgataacagatgaaatttaagtcactaaactgttcgaagnnnnnnnnttacaaccgtaaaaaagtaagtatataaac |
118 |
Q |
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| T |
3373732 |
attttgcatacatgtaggtcaaatgataagagatgaaattttagtcactaaactgctcgaagaaaaaaaattacaaccgtaaaa-agtaagtatataagc |
3373830 |
T |
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| Q |
119 |
ttattttacctaagatgtaagaagaaaatttagtgacacgttacattttcttgtccaaaaatttttagttttgggatttacagaatcttttaattaaaaa |
218 |
Q |
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| T |
3373831 |
ttattttacctaagatgtaagaagaaaatttagtgacacgttacattttcttgtccaaaaatttatagttttgggatttacagaatcttttaattaaaaa |
3373930 |
T |
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| Q |
219 |
ataataacgcttaaagatcatacatggtgacactttgaagccatgtgtccgcaggagctcaaatgccaggctatctctctg |
299 |
Q |
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| T |
3373931 |
ataataacgcttaaagatcatacatggtgacactttgaagccatgtgtccgcaggagctcaaatgccagactatctttctg |
3374011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 3347534 - 3347601
Alignment:
| Q |
232 |
aagatcatacatggtgacactttgaagccatgtgtccgcaggagctcaaatgccaggctatctctctg |
299 |
Q |
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| T |
3347534 |
aagatcatacatggtgatactttaaatccatgtgtcctaaggagctcaaatgccagactatctttctg |
3347601 |
T |
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