View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_high_11 (Length: 398)
Name: NF14912_high_11
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 34376946 - 34377321
Alignment:
| Q |
1 |
aaagccaaaatcaaagcaagagacctaaggataacggaaaatccgtacatgtctctaacaaaatcacctctaataaacaatggggaagcctcccaccaaa |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34376946 |
aaagccaaaaacaaagcaagagacctaaggataacggaaaatccgtacatgtctctaacaaaatcatctctaataaacaatggggaagcctcccaccaaa |
34377045 |
T |
|
| Q |
101 |
aacaacatccaagctgtgaccatgatgcgcaagcttatccgcacaacaattcccttcggggaaaatatgagatgaaagtggaaatgtcgccttgattacc |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34377046 |
aacaacatcc---ctgtgaccatgatgcgcaagcttatccgcacaacaattcccttcggagaaaatatgagatgaaagtggaaatgtcgccttgattacc |
34377142 |
T |
|
| Q |
201 |
attatggcacctattgcgaagagcaaacggaactaacgtaggattccaataccatctatgaatattagagtaagggaccattggttcagccacaaacatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377143 |
attatggcacctattgcgaagagcaaacagaactaacgtaggattccaatactatctatgaatattagagtaagggaccattggttcagccacaaacatc |
34377242 |
T |
|
| Q |
301 |
aacaacggcctatgattaaagaaaaaatctttcaagggaatacgggaatccaaattaccaataccttggatgttccagt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34377243 |
aacaacggcctatgattaaagaaaaaatctttcaagggaatacgggaatccgaattaccaataccttggatgttccagt |
34377321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 379
Target Start/End: Complemental strand, 35976696 - 35976319
Alignment:
| Q |
4 |
gccaaaatcaaagcaagagacctaaggataacggaaaatccgtacatgtctctaacaaaatcacctctaataaacaatggggaagcctcccaccaaaaac |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||| |||||||||||||||||| |
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|
| T |
35976696 |
gccaaaatgaaagcaagagacctaaggataacggaaaatccgtgt-tgtctctataaaaatcatctctcataaacaatgggaaagcctcccaccaaaaac |
35976598 |
T |
|
| Q |
104 |
aacatccaagctgtgaccatgatgcgcaagcttatccgcacaacaattcccttcggggaaaatatgagatgaaagtggaaatgtcgccttgattaccatt |
203 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| | ||| |
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|
| T |
35976597 |
aacatccaagttgtgaccatgattcacaagcttatccacacaacaattcccttcgagaaaaatatgagatgaaagtggaaatgccgccttgattgcaatt |
35976498 |
T |
|
| Q |
204 |
atggcacctattgcgaagagcaaacggaactaacgtagg---attccaataccatctatgaatattagagtaagggaccattggttcagccacaaacatc |
300 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35976497 |
atgccacctattgcgaagagcaaacagaactaacgtaggattattccaataccatctatgaatattagagtaagggaccattggttcagccacaaacatc |
35976398 |
T |
|
| Q |
301 |
aacaacggcctatgattaaagaaaaaatctttcaagggaatacgggaatccaaattaccaataccttggatgttccagt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
35976397 |
aacaacggcctatgattaaagaaaaaatctttcaaggcaatacgggaatccgaattaccaataccttggatgttccagt |
35976319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 12879067 - 12879187
Alignment:
| Q |
4 |
gccaaaatcaaagcaagagacctaaggataacggaaaatccgtacatgtctctaacaaaatcacctctaataaacaatggggaagcctcccaccaaaaac |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
12879067 |
gccaaaatcaaagcaagagatctaaggataacggaaaatctgtatatgtctctataaaaatcatctctaataaacaatgggaaagcctcccaccaaaaac |
12879166 |
T |
|
| Q |
104 |
aacatccaagctgtgaccatg |
124 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
12879167 |
aacatccaagttgtgaccatg |
12879187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 239 - 379
Target Start/End: Original strand, 12879193 - 12879329
Alignment:
| Q |
239 |
taggattccaataccatctatgaatattagagtaagggaccattggttcagccacaaacatcaacaacggcctatgattaaag-aaaaaatctttcaagg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| ||| |
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|
| T |
12879193 |
taggattccaataccatctatgaatattagagtaagggaccattggttcagccacaaacat---caacggcgtatgaataaagaaaaaaatctttacagg |
12879289 |
T |
|
| Q |
338 |
gaatacgggaatccaaattaccaataccttggatgttccagt |
379 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||||||||| |
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|
| T |
12879290 |
caatacgggaatccgaattac--atactttggatgttccagt |
12879329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 10378483 - 10378569
Alignment:
| Q |
93 |
ccaccaaa-aacaacatccaagctgtgaccatgatgcgcaagcttatccgcacaacaattcccttcggggaaaatatgagatgaaag |
178 |
Q |
| |
|
|||||||| |||| || ||||| |||||||||||| || | |||||| | ||||||||| |||||| | ||||||||||||||||| |
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|
| T |
10378483 |
ccaccaaataacatcaaccaagttgtgaccatgatttgctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaag |
10378569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7889863 - 7889902
Alignment:
| Q |
1 |
aaagccaaaatcaaagcaagagacctaaggataacggaaa |
40 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
7889863 |
aaagccaaaaacaaagctagagacctaaggataacggaaa |
7889902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 31326590 - 31326633
Alignment:
| Q |
134 |
cttatccgcacaacaattcccttcggggaaaatatgagatgaaa |
177 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||| |
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|
| T |
31326590 |
cttatccgcacaacaatttccttcgcgaaaaatatgagatgaaa |
31326633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 35142371 - 35142323
Alignment:
| Q |
129 |
gcaagcttatccgcacaacaattcccttcggggaaaatatgagatgaaa |
177 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
35142371 |
gcaaacttatccgcacaacaattaccttcacggaaaatatgagaggaaa |
35142323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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