View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_high_12 (Length: 395)
Name: NF14912_high_12
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 379
Target Start/End: Complemental strand, 13447673 - 13447304
Alignment:
| Q |
12 |
tggtgcattaaaacttcagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatga |
111 |
Q |
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| T |
13447673 |
tggtgcattaaaacttcagggaaacgggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactctgaccttcacattatgcagaatga |
13447574 |
T |
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| Q |
112 |
atggggcaaaaccacctatccattggtcccggggtatgttttcaacacctttaatttctattatagtttattctattgtttctttttaattgtcatattt |
211 |
Q |
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| T |
13447573 |
atggggcaaaaccacctatccattagtcccggggtatgttttcaacacctttaacttctattatagtttattccgtcatttctttttaattgtcacattt |
13447474 |
T |
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| Q |
212 |
taagtaaaaacaaata--ttttgagttatacctttactttatc-aattattttatacttactatgataactagtagactgagtcaatcaaaagaaacgag |
308 |
Q |
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| T |
13447473 |
taagt-aaaacaaatattttttgagttatacctttactttatcaaattattttatacttactatgataactagtagactgagtcaatcaaaagaaacgag |
13447375 |
T |
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| Q |
309 |
tagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaac |
379 |
Q |
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| T |
13447374 |
tagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaac |
13447304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 13427055 - 13426921
Alignment:
| Q |
15 |
tgcattaaaacttcagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatg |
114 |
Q |
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| T |
13427055 |
tgcatcaaaactttagggaaacaggtgagaaagatgtagcattcaaggtgttgtattgtggtatatgtcacactgatctccatatgatgaagaatgaatg |
13426956 |
T |
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| Q |
115 |
gggcaaaaccacctatccattggtcccggggtatg |
149 |
Q |
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| T |
13426955 |
gggcaattccatctatccattagttccagggtatg |
13426921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 13420118 - 13419971
Alignment:
| Q |
15 |
tgcattaaaacttcagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatg |
114 |
Q |
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| T |
13420118 |
tgcatcaaaactttagggaaactggtgagaaagatgtagcgttcaaggtgatgtattgtggtatatgccacactgacctccatatgatgaagaatgaatg |
13420019 |
T |
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| Q |
115 |
gggcaaaaccacctatccattggtcccggggtatgttttcaacacctt |
162 |
Q |
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| T |
13420018 |
gggaaattccatctatccattagttccagggtatgcttccaactcctt |
13419971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 13414081 - 13414023
Alignment:
| Q |
29 |
agggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactc |
87 |
Q |
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| T |
13414081 |
agggaaactggtgaaaaagatgtagcattcaaggtgttgtattgtgggatatgtcactc |
13414023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 13409246 - 13409321
Alignment:
| Q |
24 |
acttcagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacat |
99 |
Q |
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| T |
13409246 |
actttagggaaacaggtgagaaagatgtggcattcaaagtgttgtattgcggaatatgccacacagacctccacat |
13409321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 13388776 - 13388901
Alignment:
| Q |
26 |
ttcagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatggggcaaaacca |
125 |
Q |
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||||| ||||| ||||| |||||||| |||||||| | || ||||||||||||||||||||||| | ||||| | ||||||||||||| | | | | |
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| T |
13388776 |
ttcagagaaactggtgaaaaagatgtggcattcaaaatattgtattgtgggatatgtcactcagatgtccacatggcgaagaatgaatggggaatatcta |
13388875 |
T |
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| Q |
126 |
cctatccattggtcccggggtatgtt |
151 |
Q |
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| T |
13388876 |
cctatcccctagttccggggtatgtt |
13388901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 13393152 - 13393245
Alignment:
| Q |
26 |
ttcagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatggggca |
119 |
Q |
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| T |
13393152 |
ttcagagaaacgggtgaaaaagatgtggcatttaaagtactgtattgtgggatatgtcactcggatcttcatatgataaagaatgaatggggca |
13393245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 13384940 - 13385004
Alignment:
| Q |
26 |
ttcagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcaga |
90 |
Q |
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| T |
13384940 |
ttcagagaaacaggagaaaaagatgtggcattcaaaatattgtattgtggaatatgtcactcaga |
13385004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 28429305 - 28429394
Alignment:
| Q |
28 |
cagggaaacaggtgagaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatgggg |
117 |
Q |
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| T |
28429305 |
cagggaaactggagagaaagatgtaagattcaaagtgctattttgtggtatatgtcactcagatcttcacatgttgaagaatgaatgggg |
28429394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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