View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_high_15 (Length: 335)
Name: NF14912_high_15
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 24358446 - 24358756
Alignment:
| Q |
1 |
ctgttcttccgggtaagcgcgccgcaatttgagaccatctttgaaaatgaagcaaaatttaatatgtttgcttaataattcnnnnnnnttatgaaataga |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24358446 |
ctgttcttccgggtaagcgtgccgcaatttgagaccatctttgaaaatgaagcaaaatttaatatgtttgcttaataattcaaaaaaattatgaaataga |
24358545 |
T |
|
| Q |
101 |
cagtaaatagatatannnnnnnngagggacattaaatagagttatgttgagtatatatgactacatatatgtttattaattaatttctgtcaatttttta |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24358546 |
cagtaaatagatat--tttttttgagggacattaaatagagttatgttgagt---------tacatatatgtttattaattaatttctgtcaatttttta |
24358634 |
T |
|
| Q |
201 |
aaactaaaaaagaatgcatgctttgcatggaagttaattagtcnnnnnnngaacaatacacgtagtatggagtgtcttcaactcgaagtccaaataaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358635 |
aaactaaaaaagaatgcatgctttgcatggaagttaattagtctttttttgaacaatacacgtagtatggagtgtcttcaactcgaagtccaaataaaga |
24358734 |
T |
|
| Q |
301 |
cgaatcacagtgcctatatgtt |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
24358735 |
cgaatcacagtgcctatatgtt |
24358756 |
T |
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