View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_high_16 (Length: 331)
Name: NF14912_high_16
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 316
Target Start/End: Complemental strand, 34536615 - 34536304
Alignment:
| Q |
5 |
ggcaacaacagcagtagaaccaacagcatcacagtgaggagtttgaagctcacacttacaactgaagctctgtttcgtcttactagaattcaacacttct |
104 |
Q |
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| T |
34536615 |
ggcaacaacagcagtagaaccaacagcatcacagtgaggagtttgaagctcacacttacaactgaagctctgtttcgtcttactagaattcaacacttct |
34536516 |
T |
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| Q |
105 |
tcatccattctaataaaactcttctccatcgttgacttccagtcaaccttctctttctctacttcttcttcaacaatttcatgcaacctttctttacaca |
204 |
Q |
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| T |
34536515 |
tcatccattctaataaaactcttctccatcgttgatttccagtcaaccttctctttctctacttcttcttcaacaatttcatgcaacctttctttacaca |
34536416 |
T |
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| Q |
205 |
tagtcgcaacctgttaaaaacaaattaacgtaattaaaaaacagatccactnnnnnnnttattatgaatttatgataacgattattagaatttcgagcaa |
304 |
Q |
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| T |
34536415 |
tagtcgcaacctgttaaaaacaaattaacgtaattaaaaaatagatccactaaaaaaattattatgaatttatgataacgattattagaatttcgagcaa |
34536316 |
T |
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| Q |
305 |
ttacatgtgaac |
316 |
Q |
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|||||||||||| |
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| T |
34536315 |
ttacatgtgaac |
34536304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 30836533 - 30836484
Alignment:
| Q |
9 |
acaacagcagtagaaccaacagcatcacagtgaggagtttgaagctcaca |
58 |
Q |
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|||||||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
30836533 |
acaacagctgtggatccaacagcatcacagtgaggagtttgaagctcaca |
30836484 |
T |
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