View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14912_high_28 (Length: 258)

Name: NF14912_high_28
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14912_high_28
NF14912_high_28
[»] chr6 (19 HSPs)
chr6 (1-240)||(4406590-4406829)
chr6 (76-240)||(33745748-33745912)
chr6 (14-203)||(14527964-14528153)
chr6 (14-203)||(14532690-14532879)
chr6 (76-225)||(1682699-1682848)
chr6 (16-240)||(8873149-8873373)
chr6 (76-225)||(33629750-33629899)
chr6 (77-225)||(19348919-19349067)
chr6 (4-234)||(24749229-24749459)
chr6 (17-225)||(25317448-25317656)
chr6 (17-225)||(26204942-26205150)
chr6 (16-225)||(15673418-15673627)
chr6 (48-225)||(23347804-23347981)
chr6 (147-225)||(13755189-13755267)
chr6 (68-234)||(4474343-4474509)
chr6 (77-234)||(19256699-19256856)
chr6 (14-57)||(9051079-9051122)
chr6 (41-124)||(33804399-33804482)
chr6 (159-215)||(19227250-19227306)
[»] scaffold0418 (1 HSPs)
scaffold0418 (52-225)||(7304-7477)
[»] chr7 (24 HSPs)
chr7 (52-225)||(15654043-15654216)
chr7 (52-225)||(46623333-46623506)
chr7 (70-240)||(12379048-12379218)
chr7 (48-225)||(13439678-13439855)
chr7 (70-238)||(3104550-3104718)
chr7 (41-222)||(5020913-5021094)
chr7 (14-209)||(5326362-5326557)
chr7 (70-188)||(43104958-43105076)
chr7 (48-225)||(28326981-28327158)
chr7 (76-240)||(37724208-37724372)
chr7 (41-124)||(26078834-26078917)
chr7 (41-124)||(26102621-26102704)
chr7 (80-211)||(45942508-45942639)
chr7 (28-101)||(7377335-7377408)
chr7 (16-225)||(45235543-45235752)
chr7 (5-89)||(31025973-31026057)
chr7 (14-116)||(38780697-38780799)
chr7 (76-200)||(6909704-6909828)
chr7 (166-234)||(43571896-43571964)
chr7 (16-122)||(18767001-18767107)
chr7 (76-121)||(18670823-18670868)
chr7 (118-191)||(26714213-26714286)
chr7 (15-103)||(19728079-19728167)
chr7 (147-203)||(30385924-30385980)
[»] chr4 (18 HSPs)
chr4 (52-225)||(7663576-7663749)
chr4 (76-225)||(3130317-3130466)
chr4 (48-221)||(8655415-8655588)
chr4 (16-225)||(23873814-23874023)
chr4 (48-225)||(47540550-47540727)
chr4 (52-203)||(23279236-23279387)
chr4 (16-222)||(55298216-55298422)
chr4 (48-225)||(8487319-8487496)
chr4 (30-225)||(2631005-2631200)
chr4 (17-240)||(13159095-13159317)
chr4 (41-240)||(20669104-20669303)
chr4 (88-194)||(1121013-1121119)
chr4 (17-116)||(42169466-42169565)
chr4 (147-225)||(20673433-20673511)
chr4 (144-240)||(53809562-53809658)
chr4 (5-116)||(4525074-4525185)
chr4 (55-113)||(25875140-25875198)
chr4 (48-129)||(5817615-5817696)
[»] chr5 (12 HSPs)
chr5 (18-240)||(31862188-31862410)
chr5 (49-225)||(10487244-10487420)
chr5 (48-225)||(32917942-32918119)
chr5 (16-225)||(34480549-34480758)
chr5 (17-240)||(6020332-6020555)
chr5 (48-222)||(6264539-6264713)
chr5 (16-198)||(34858058-34858240)
chr5 (173-240)||(30510368-30510435)
chr5 (173-240)||(30550708-30550775)
chr5 (41-124)||(35123145-35123228)
chr5 (14-88)||(4399468-4399542)
chr5 (48-101)||(15500108-15500161)
[»] chr1 (19 HSPs)
chr1 (52-225)||(36928796-36928969)
chr1 (70-225)||(36305431-36305586)
chr1 (16-240)||(48073755-48073979)
chr1 (48-225)||(21527786-21527963)
chr1 (30-225)||(4644620-4644815)
chr1 (70-225)||(14365963-14366118)
chr1 (16-225)||(32353635-32353844)
chr1 (17-225)||(37530158-37530366)
chr1 (14-240)||(34853963-34854189)
chr1 (30-225)||(3692234-3692429)
chr1 (52-225)||(47115917-47116090)
chr1 (144-240)||(44929956-44930052)
chr1 (76-200)||(48266081-48266205)
chr1 (160-232)||(37139457-37139529)
chr1 (49-225)||(38231313-38231489)
chr1 (71-225)||(14119412-14119567)
chr1 (6-200)||(30970971-30971165)
chr1 (52-138)||(25639888-25639974)
chr1 (28-124)||(43810415-43810511)
[»] chr3 (21 HSPs)
chr3 (14-240)||(28675252-28675478)
chr3 (52-225)||(30167683-30167856)
chr3 (52-238)||(9378726-9378912)
chr3 (27-240)||(9163452-9163665)
chr3 (48-225)||(49732271-49732448)
chr3 (76-225)||(13448131-13448280)
chr3 (48-225)||(2813838-2814015)
chr3 (147-225)||(23601497-23601575)
chr3 (48-225)||(7146666-7146843)
chr3 (48-221)||(25873454-25873627)
chr3 (160-219)||(26009779-26009838)
chr3 (147-225)||(6176816-6176894)
chr3 (4-121)||(18369397-18369515)
chr3 (147-225)||(29309132-29309210)
chr3 (5-218)||(54440458-54440671)
chr3 (4-114)||(36708466-36708576)
chr3 (15-103)||(14868245-14868333)
chr3 (41-124)||(19824234-19824317)
chr3 (76-186)||(32004633-32004743)
chr3 (17-89)||(27497356-27497428)
chr3 (133-209)||(46909021-46909097)
[»] chr8 (17 HSPs)
chr8 (52-225)||(7451981-7452154)
chr8 (1-122)||(8639325-8639447)
chr8 (14-173)||(39483130-39483289)
chr8 (21-240)||(27083213-27083432)
chr8 (143-234)||(7555167-7555258)
chr8 (147-225)||(16421347-16421425)
chr8 (143-240)||(30501688-30501785)
chr8 (147-223)||(2871914-2871990)
chr8 (48-224)||(19385049-19385225)
chr8 (79-234)||(36897608-36897763)
chr8 (6-113)||(31216941-31217048)
chr8 (5-200)||(40467408-40467603)
chr8 (6-185)||(43613442-43613621)
chr8 (160-234)||(6900633-6900707)
chr8 (147-211)||(412718-412782)
chr8 (5-89)||(43254200-43254284)
chr8 (24-116)||(30261289-30261381)
[»] chr2 (15 HSPs)
chr2 (16-225)||(33547465-33547674)
chr2 (52-225)||(45421147-45421320)
chr2 (48-225)||(13549749-13549926)
chr2 (16-205)||(31594147-31594336)
chr2 (53-240)||(31085960-31086147)
chr2 (49-211)||(26681507-26681669)
chr2 (6-197)||(31774267-31774458)
chr2 (79-240)||(26180248-26180409)
chr2 (16-152)||(26490664-26490800)
chr2 (48-225)||(43627123-43627301)
chr2 (16-225)||(9949602-9949811)
chr2 (28-116)||(4040494-4040582)
chr2 (16-116)||(22052220-22052320)
chr2 (17-211)||(36803506-36803700)
chr2 (5-89)||(3119549-3119633)
[»] scaffold0029 (1 HSPs)
scaffold0029 (48-224)||(134975-135151)
[»] scaffold0002 (2 HSPs)
scaffold0002 (48-224)||(312802-312978)
scaffold0002 (48-224)||(328256-328432)
[»] scaffold0308 (1 HSPs)
scaffold0308 (41-124)||(16280-16363)
[»] scaffold0112 (1 HSPs)
scaffold0112 (21-116)||(16049-16144)
[»] scaffold0220 (1 HSPs)
scaffold0220 (48-122)||(22654-22728)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4406590 - 4406829
Alignment:
Q  1 agcagttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagaca 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4406590 agcagttagcctatgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaaccaaatgtggctttcttagctttcagccaacctaaagaca 4406689  T
Q  101 acattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagcca 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||    
T  4406690 acattttaaccttatccaacaaccggggagtaggagttgcatcattattaaacagacgattgtttcgttcattccacacaacccaggcacaaagaagtca 4406789  T
Q  201 tattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  4406790 tattagctgcagaaacgaacgtctagctttaccaccacct 4406829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 76 - 240
Target Start/End: Original strand, 33745748 - 33745912
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||| ||| |||||||||||   | |||||||||||||||||  |||| |||||||| ||| ||||||||||| |||||| ||||| |||||||    
T  33745748 ttagctttcaaccaccctaaagacaaacctataaccttatccaacaacttgggaatgggagttacataattattaaacagacgattatttcgctcattcc 33745847  T
Q  176 acacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||    
T  33745848 acacaacccaagcacaaagaagccatatgagctgaagaaatgaacgtctagcttttccaccacct 33745912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 14527964 - 14528153
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    ||||||| |||| |||||||||| || ||||||| |||||||||||  |||| |||||||||||| |||| ||||| ||||| |||||   |||||| ||    
T  14527964 tgcccaagcaagttaaagggctcaaccaccacctatgagtaccaaacacaaaagtggctttcttaacttttagccaccctaaggacaaatatttaacgtt 14528063  T
Q  114 atccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatat 203  Q
    |||||||||||||||| |||| |||||   |||||| || |    ||| || |||||||||||||||||| | |||||||||||||||||    
T  14528064 atccaacaaccggggaatgggggttgctgaattattgaataatatattattacgttcattccacacaaccaaggcacaaagaagccatat 14528153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 14532690 - 14532879
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    ||||||| |||| ||||||||||||| ||||||| |||||||||||  |||| ||||||||||||||||| ||||| ||||| ||||    | |||||||    
T  14532690 tgcccaagcaagttaaagggctcgaccaccacctatgagtaccaaacacaaaagtggctttcttagcttttagccatcctaaggacagatatataacctt 14532789  T
Q  114 atccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatat 203  Q
    |||||||||||||||| |||| |||||   ||| || || |    ||| || |||||||||||||||||| | ||||||||||| |||||    
T  14532790 atccaacaaccggggaatgggggttgcggaatttttgaatagcatattattacgttcattccacacaaccaaggcacaaagaagtcatat 14532879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 1682699 - 1682848
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||| |||| |||| ||||||| ||| ||||| || ||||| |||||| || |||||    |||||||||||| |||||| |||||||||||||    
T  1682699 ttagctttcaaccaagctaaggacaacaatttgaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattatttcgttcattcc 1682798  T
Q  176 acacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||| ||||| |||||||| || || |||| ||| |||||||||    
T  1682799 acacaacccaggcacagagaagccaaataagttgcataaaagaacgtcta 1682848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 8873373 - 8873149
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||   ||||| |||||| |||| || ||||| ||||||||||||||||||||||||| ||  ||||||||||    
T  8873373 cccaaacaaacaagagggcttgaccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttat 8873274  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || |  ||  |||| ||  || ||| |||||||| ||| || |||||||||||||| ||||||||  |||| |||||||||||||| |||| |||    
T  8873273 caagtaaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagttgcataaa 8873174  T
Q  216 cgaacgtctaactttaccaccacct 240  Q
     |||||||||||   ||||||||||    
T  8873173 agaacgtctaacagcaccaccacct 8873149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 33629750 - 33629899
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||| |||| |||| ||||||| ||| ||||| || ||||| |||||| ||||||||     |||||||||||  ||||| ||||||| |||||    
T  33629750 ttagctttcaaccaagctaaggacaacaatttgaccttgtctaacaaacggggaatgggagttattatattattaaacaggcgattatttcgttaattcc 33629849  T
Q  176 acacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||| ||||| |||||||| || || |||| ||| |||||||||    
T  33629850 acacaacccaggcacagagaagccaaataagttgcataaaagaacgtcta 33629899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 19348919 - 19349067
Alignment:
Q  77 tagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcca 176  Q
    ||||||| |||||||||||||||||||| |||| |||||| |  || |  ||  |||| ||  || ||| |||||||||||| || ||||||||||||||    
T  19348919 tagctttaagccaacctaaagacaacatcttaatcttatctagtaaacaagggatgggggtaacaccatgattaaacatacggttatttcgttcattcca 19349018  T
Q  177 cacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
     |||||||| ||||| |||||||||||||| |||| ||| || ||||||    
T  19349019 aacaacccaggcacagagaagccatattagttgcataaaagaccgtcta 19349067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 24749229 - 24749459
Alignment:
Q  4 agttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaaca 103  Q
    ||||||||  |||||||||||||||||||||| ||| | || |||||||| |||||| ||||  |||  || || | ||||||||| |||| ||| ||||    
T  24749229 agttagccaatgcccaaacaagctaaagggcttgaccatcatctctgagtgccaaaaacaaacatggtatttttggttttcagccaccctagagataaca 24749328  T
Q  104 ttttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatat 203  Q
     ||||| ||| || ||||  ||||||      ||  || ||||||| ||||  || ||||||||||||||||| |||||||||| ||| |||||||| ||    
T  24749329 atttaatcttgtctaacagacggggaactaaggtcacaacattattgaacaaccggttgtttcgttcattccagacaacccaagtacacagaagccaaat 24749428  T
Q  204 tagctgcagaaacgaacgtctaactttacca 234  Q
    ||||||||| | ||||| | || ||||||||    
T  24749429 tagctgcaggagcgaacatttagctttacca 24749459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 25317448 - 25317656
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    |||||||| | | |||||| ||| |||||  |||||| |||||| |||| || | ||| ||| |||| |||||||||||||||||||| |||| ||||||    
T  25317448 ccaaacaaacaagagggcttgacgaccactgctgagttccaaaaacaaaggtagtttttttaactttaagccaacctaaagacaacatcttaatcttatc 25317547  T
Q  117 caacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaac 216  Q
     || || |  ||  |||| ||  || | | |||||| | ||| || |||| ||||||||||||||| || |||||||||||||| ||||| |||| |||     
T  25317548 taataaacaagggatgggggtaacaacctgattaaagagacggttatttctttcattccacacaactcatgcacaaagaagccaaattagttgcataaaa 25317647  T
Q  217 gaacgtcta 225  Q
    |||||||||    
T  25317648 gaacgtcta 25317656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 26204942 - 26205150
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    |||||||| | | |||||| ||| |||||  |||||| |||||| |||| || | ||| ||| |||| |||||||||||||||||||| |||| ||||||    
T  26204942 ccaaacaaacaagagggcttgacgaccactgctgagttccaaaaacaaaggtagtttttttaactttaagccaacctaaagacaacatcttaatcttatc 26205041  T
Q  117 caacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaac 216  Q
     || || |  ||  |||| ||  || | | |||||| | ||| || |||| ||||||||||||||| || |||||||||||||| ||||| |||| |||     
T  26205042 taataaacaagggatgggggtaacaacctgattaaagagacggttatttctttcattccacacaactcatgcacaaagaagccaaattagttgcataaaa 26205141  T
Q  217 gaacgtcta 225  Q
    |||||||||    
T  26205142 gaacgtcta 26205150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 15673418 - 15673627
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||| ||  |||| |||||    
T  15673418 cccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttat 15673517  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | || || |  ||  |||| ||  ||  || |||||||| ||| || || ||||||||||| |||||||| ||||| |||||||| ||||| |||| |||    
T  15673518 ctaataaacaagggatgggggtaacaaaatgattaaacaaacggttattacgttcattccaaacaacccaggcacatagaagccaaattagttgcataaa 15673617  T
Q  216 cgaacgtcta 225  Q
     |||||||||    
T  15673618 agaacgtcta 15673627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 23347981 - 23347804
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  |||| ||||||    || |  ||  |||| ||  || ||| |    
T  23347981 ctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttatctggtaaacaagggatgggggtaacaacatga 23347882  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||||||| || || ||||||||||| |||||||| ||||| | |||||||||||| |||| ||| |||||||||    
T  23347881 ttaaacatacggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcataaaagaacgtcta 23347804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 13755189 - 13755267
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||||| ||||| || |||||||||||||||||  |||| ||||| |||||||| |||| ||| |||||||||    
T  13755189 attaaacatacggttgttacgctcattccacacaacccagacacatagaagtcatattagttgcataaaagaacgtcta 13755267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 4474343 - 4474509
Alignment:
Q  68 tggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcg 167  Q
    ||||||| |||||||||||||| | ||| || |||| ||||| ||||||||||||||  ||       ||| || |||||||||||||  | || || ||    
T  4474343 tggcttttttagctttcagccaccttaaggataacaatttaatcttatccaacaacctagggacatccgttacaacattattaaacatgtggttattacg 4474442  T
Q  168 ttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttacca 234  Q
    |||  ||||||| ||||||| |||||||||||| || ||||||| ||| |||||| || ||||||||    
T  4474443 ttcggtccacacgacccaagtacaaagaagccagatgagctgcataaaggaacgtttagctttacca 4474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 234
Target Start/End: Original strand, 19256699 - 19256856
Alignment:
Q  77 tagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcca 176  Q
    ||||||||| ||| |||||||||||||| |||||||| || || || |||||| | |  ||  || |||||||||| |  | ||| ||||||||||||||    
T  19256699 tagctttcaaccatcctaaagacaacatattaaccttgtctaataaacggggaatagacgtaacaacattattaaagaggcaattatttcgttcattcca 19256798  T
Q  177 cacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttacca 234  Q
     |||||| |  |||| |||||||| || || |||| ||| || |||||| ||||||||    
T  19256799 aacaacctagacacacagaagccaaatgagttgcataaaagagcgtctagctttacca 19256856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 9051079 - 9051122
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtacca 57  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||    
T  9051079 tgcccaaacaagctaaagggcttgaccaccaactctgagtacca 9051122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 33804399 - 33804482
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaacc 124  Q
    ||||| ||||||||||| || ||||  |||| || |||||||| ||||| ||||| || |||| ||||| ||||||||||||||    
T  33804399 accacatctgagtaccataaacaaacatggcatttttagctttaagccaccctaatgataacaatttaatcttatccaacaacc 33804482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 19227250 - 19227306
Alignment:
Q  159 attgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    |||||| |||||| |||| | ||||||||||||||||||||| || ||||| |||||    
T  19227250 attgttacgttcagtccataaaacccaagcacaaagaagccaaataagctggagaaa 19227306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 7304 - 7477
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||||| |||| || |||||  ||||||||| ||||||||| |||||||| |||||||| || ||||| |||||| || |||||    |||||||||    
T  7304 gtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaaccttgtctaacaaacggggaatgagagttattacattattaa 7403  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| || |||||||||||||||||||| ||||||||||||||||| || |||| ||| |||||||||    
T  7404 acagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtcta 7477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 15654216 - 15654043
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||||| |||| || | ||| |||||||||| ||| |||||||||||||| || ||||| || ||||| |||||| ||||||||    |||||||||    
T  15654216 gtaccaaaaacaaaagtagttttattagctttcaaccatcctaaagacaacatctttaccttgtctaacaaacggggaatgggagttattacattattaa 15654117  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| |||||||||||||||||||| || ||||||||||||||||| || |||| ||| |||||||||    
T  15654116 acagacgattatttcgttcattccacacaactcatgcacaaagaagccatataagttgcataaaagaacgtcta 15654043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 46623333 - 46623506
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||||| |||| || ||||| |||||||||| ||| ||||| |||||||| |||||||| || ||||| |||||| || |||||    |||||||||    
T  46623333 gtaccaaaaacaaaagtagcttttttagctttcaaccatcctaaggacaacatcttaaccttgtctaacaaacggggaatgagagttattacattattaa 46623432  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| ||||||||||| ||||| ||||| ||||||||||||||||| || |||| ||| |||||||||    
T  46623433 acagacgattatttcgttcatttcacacgacccatgcacaaagaagccatataagttgcataaaagaacgtcta 46623506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 12379218 - 12379048
Alignment:
Q  70 gctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgtt 169  Q
    ||||| ||||||||||||||||||||||||||||  ||||| || || || || | |||  |||||||  |  ||||||||||||  |  || |||||||    
T  12379218 gcttttttagctttcagccaacctaaagacaacaacttaacattgtctaataaacaggggatgggagtaactacattattaaacaggcatttatttcgtt 12379119  T
Q  170 cattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    ||||||||||||| || ||||| ||||||||||  || |||| ||| ||||||||| ||||||||||||||    
T  12379118 cattccacacaacgcaggcacacagaagccatacgagttgcataaaagaacgtctagctttaccaccacct 12379048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 13439678 - 13439855
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  ||||||||||| |  || | |||  |||| ||  || | | |    
T  13439678 ctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaaccttatcaagtaaacaggggatgggggtaacaacgtga 13439777  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| ||| |||||||||    
T  13439778 ttaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtcta 13439855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 3104550 - 3104718
Alignment:
Q  70 gctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgtt 169  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| || | ||| |  ||| ||||||||  | ||| |||||| |  |||||||||||||    
T  3104550 gcttttttagctttcagccaacctaaagacaacatcttaaccttgtctagcaaacatggaatgggagttataacatcattaaataggcgattgtttcgtt 3104649  T
Q  170 cattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccac 238  Q
    ||||||| ||||| || ||||| | ||| |||| ||| |||| ||| ||||||||| | ||| ||||||    
T  3104650 cattccaaacaacacaggcacacataagacataatagttgcataaaagaacgtctagcattagcaccac 3104718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 5021094 - 5020913
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgc 140  Q
    ||||| ||||||||||| || ||||  ||||||| |||||||||||||| ||||| || |||| ||||| ||||||||||||||| ||   |   ||| |    
T  5021094 accacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataacaatttaatcttatccaacaaccgcgggacgtccgttac 5020995  T
Q  141 atcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgt 222  Q
    | ||||||||||||  || || || ||||| |||||||||| ||||| ||| |||| ||| |||||||| | ||| ||||||    
T  5020994 aacattattaaacaggcggttattacgttcgttccacacaatccaagtacatagaatccagattagctgtaaaaaggaacgt 5020913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 5326362 - 5326557
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    |||||||||||||||||||||| ||| ||||| | || || |||||| ||||  || | || || |||||||  || |||| ||| |||| |||||||||    
T  5326362 tgcccaaacaagctaaagggcttgaccaccacatatgtgtgccaaaaacaaacatgacattgttggctttcaatcaccctagagataacaatttaacctt 5326461  T
Q  114 atccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctg 209  Q
     || ||||  |||||||    |||| || ||||||| ||||  || ||||||||||| ||||| |||||||||| ||| |||||||| ||||||||    
T  5326462 gtctaacaggcggggagctaaagttacaacattattgaacaaccggttgtttcgttcgttccagacaacccaagtacacagaagccaaattagctg 5326557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 43104958 - 43105076
Alignment:
Q  70 gctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgtt 169  Q
    ||||| |||||||||| ||| |||||||| ||||| |||||||| || || || |||||| |||||||  |  ||||||||||||  ||||||||| |||    
T  43104958 gcttttttagctttcaaccatcctaaagaaaacatcttaaccttgtctaataaacggggaatgggagtaaccacattattaaacaggcgattgttttgtt 43105057  T
Q  170 cattccacacaacccaagc 188  Q
    ||||||| |||| ||||||    
T  43105058 cattccaaacaagccaagc 43105076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 28326981 - 28327158
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| ||||| | ||||| |||||||||| |||||||| ||||| ||  |||| |||||| |  || |  ||  |||| ||  || ||| |    
T  28326981 ctgagtcccaaaaacaaatatagcttttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaagggatgggggtaacaacatga 28327080  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||| || || || ||||||||||| ||||||||||||||||||||||| || || |||| ||| |||||||||    
T  28327081 ttaaacattcggttattacgttcattccaaacaacccaagcacaaagaagccaaataagttgcataaaagaacgtcta 28327158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 37724372 - 37724208
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||||||| ||||| || |||| ||||| |||||||||||||| |||   |   ||| || ||||| ||||||   | || || ||||| ||||    
T  37724372 ttagctttcagccaccctaatgataacaatttaatcttatccaacaacctgggtacgtccgttacaacattactaaacaagtggttattacgttcgttcc 37724273  T
Q  176 acacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    |||||| | ||| ||| |||| ||| |||||||||||||| |||||| ||||||||||| |||||    
T  37724272 acacaatcaaagtacacagaatccaaattagctgcagaaaagaacgtttaactttaccaacacct 37724208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 26078917 - 26078834
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaacc 124  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||  ||||  | |||| ||||| |||||| |||||||    
T  26078917 accacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataacagtttaatcttatcaaacaacc 26078834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 26102704 - 26102621
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaacc 124  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||  ||||  | |||| ||||| |||||| |||||||    
T  26102704 accacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataacagtttaatcttatcaaacaacc 26102621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 45942508 - 45942639
Alignment:
Q  80 ctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacac 179  Q
    |||| ||||||||||||| ||||||||||| |||||| || || |  ||  |||| ||  || ||| |||||||| | | || |||||||||||||||||    
T  45942508 ctttaagccaacctaaaggcaacattttaatcttatctaataaacaagggatgggggtaacaacatgattaaacaaatggttatttcgttcattccacac 45942607  T
Q  180 aacccaagcacaaagaagccatattagctgca 211  Q
    ||||||  ||||||||||||| ||||| ||||    
T  45942608 aacccagacacaaagaagccaaattagttgca 45942639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 7377335 - 7377408
Alignment:
Q  28 aaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaa 101  Q
    |||||||| ||| ||||||| | ||||||||| | ||||||||| || ||| ||||||||||||||||||||||    
T  7377335 aaagggcttgaccaccacctatcagtaccaaacgaaaatgtggcatttttaactttcagccaacctaaagacaa 7377408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 45235543 - 45235752
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| ||||| ||||||||||||||||||| | | |||| ||| |    
T  45235543 cccaaacaaacaagagggcttgaccaccacgactgagttccaaaaacaaaggtagcttttttagcattcagccaacctaaagacatcgtcttaatctttt 45235642  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | || || |  ||  ||||  |  || ||| |||||||| ||| || |||| ||||||||| ||||||||  ||||  ||||||||||||| |||| |||    
T  45235643 ctaataaacaagggatggggataacaacatgattaaacaaacggttatttcattcattccaaacaacccagacacatggaagccatattagttgcataaa 45235742  T
Q  216 cgaacgtcta 225  Q
     |||||||||    
T  45235743 agaacgtcta 45235752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 31026057 - 31025973
Alignment:
Q  5 gttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagcca 89  Q
    |||||||  ||||||||||||| ||||| || ||| ||||| ||||||| |||||| |||| ||||| || ||||||||||||||    
T  31026057 gttagccaatgcccaaacaagccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 31025973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 38780799 - 38780697
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    ||||||||||| |||||||| |  || ||||||| |||||||||||| ||||  || | || |||||||||||| | |||| ||| |||| |||||||||    
T  38780799 tgcccaaacaatctaaagggtttaaccaccacctatgagtaccaaaaacaaacatgacattattagctttcagcgaccctagagataacaatttaacctt 38780700  T
Q  114 atc 116  Q
    |||    
T  38780699 atc 38780697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 6909704 - 6909828
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    ||||||||| |||| ||||||||||||| ||| | |||||| ||||| || ||| | | |||  ||| |||||| |||| ||| || |||||||||||||    
T  6909704 ttagctttcggccaccctaaagacaacaatttgatcttatctaacaagcgtggaatagaagtaacattattattgaacaaacggttatttcgttcattcc 6909803  T
Q  176 acacaacccaagcacaaagaagcca 200  Q
    | | |||||||| ||| | ||||||    
T  6909804 atataacccaagaacacaaaagcca 6909828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 43571896 - 43571964
Alignment:
Q  166 cgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttacca 234  Q
    ||||| |||||||||| ||||| ||| |||| ||| |||||||||||||| |||||| || ||||||||    
T  43571896 cgttcgttccacacaatccaagtacacagaatccaaattagctgcagaaaagaacgtttagctttacca 43571964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 18767001 - 18767107
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||||| |||||| | ||| |||| ||||| |||||| || ||||    || || |||||||||||||| || ||||| |||| |||||||||||    
T  18767001 cccaaacaagcaaaagggttggaccaccatctctgcgtaccataaacaaacacagcctttttagctttcagccaccccaaagataacaatttaaccttat 18767100  T
Q  116 ccaacaa 122  Q
    | |||||    
T  18767101 ctaacaa 18767107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 18670823 - 18670868
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaaca 121  Q
    |||||||||||||| |||||||| |||| |||||||||||| ||||    
T  18670823 ttagctttcagccaccctaaagataacaatttaaccttatctaaca 18670868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 26714213 - 26714286
Alignment:
Q  118 aacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcaca 191  Q
    ||||| |||||| | |||||  || |||||||||||| |||||| |||||||| ||| ||||||||||| ||||    
T  26714213 aacaatcggggaattggagtaacaacattattaaacagacgattatttcgttctttcgacacaacccaaacaca 26714286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 19728079 - 19728167
Alignment:
Q  15 gcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaaca 103  Q
    |||||||||| | | ||| || ||| ||||| ||||||| |||||| |||| ||||| || ||||||||||||||  ||||||| ||||    
T  19728079 gcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacgctaaagataaca 19728167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 30385924 - 30385980
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatat 203  Q
    |||||||||||| || || ||||||||||| ||||||||  |||| |||||||||||    
T  30385924 attaaacatacggttattacgttcattccaaacaacccagacacatagaagccatat 30385980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 7663749 - 7663576
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||||| |||| || |||||  ||||||||| ||||||||| |||||||| |||||||| || ||||| |||||| || |||||    |||||||||    
T  7663749 gtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaaccttgtctaacaaacggggaatgagagttattacattattaa 7663650  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| || |||||||||||||||||||| ||||||||||||||||| || |||| ||| |||||||||    
T  7663649 acagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtcta 7663576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 3130466 - 3130317
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||| |||| |||| ||||||| ||| ||||| || ||||| |||||| || |||||    |||||||||||| |||||| ||| |||||||||    
T  3130466 ttagctttcaaccaagctaaggacaacaatttgaccttgtctaacaagcggggaatgagagttattacattattaaacagacgattattttgttcattcc 3130367  T
Q  176 acacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||| |||||||||||||| || || |||| ||| |||||||||    
T  3130366 acacaacccaggcacaaagaagccaaataagttgcataaaagaacgtcta 3130317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 8655588 - 8655415
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||||||  |||| || ||||| ||||| |||| |||| |||| |||||||| || |||||||| ||||| |||||| ||||||||    |||||    
T  8655588 ctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagttattacatta 8655489  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacg 221  Q
    |||||||  ||||| ||||| ||||||||||||||||| ||||| |||||||| || || |||| ||| |||||    
T  8655488 ttaaacaggcgattatttcgctcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacg 8655415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 23874023 - 23873814
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  |||| |||||    
T  23874023 cccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttat 23873924  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || | |||  |||| ||  || ||| |||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| |||    
T  23873923 caagtaaacaggggatgggggtcacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaa 23873824  T
Q  216 cgaacgtcta 225  Q
     |||||||||    
T  23873823 agaacgtcta 23873814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 47540550 - 47540727
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||||||  |||| || ||||| |||||||||| ||||  ||| |||||||| || ||||| || ||||| |||| | || |||||    |||||    
T  47540550 ctgagtaccaaacacaaaagtagcttttttagctttcaaccaagttaaggacaacatcttgaccttgtctaacaaacgggaaatgagagttattacatta 47540649  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||| |||||||| || || |||| ||| |||||||||    
T  47540650 ttaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacgtcta 47540727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 23279236 - 23279387
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||| ||| |||| || ||||| ||| |||| ||||| |||||||  ||||| |||||||| || || || |||||  |||||||  || |||||||||    
T  23279236 gtaccgaaaacaaaagtagcttttttaccttttagccaccctaaaggaaacatcttaaccttgtctaataaacgggggatgggagtaacaacattattaa 23279335  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatat 203  Q
    ||| |||||| |||||||| ||||||||||||||  ||||||||||||||||    
T  23279336 acagacgattatttcgttcgttccacacaacccacacacaaagaagccatat 23279387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 55298216 - 55298422
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  |||| |||||    
T  55298216 cccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttat 55298315  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || | |||  | || ||  || ||| |||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| |||    
T  55298316 caagtaaacaggggataggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaa 55298415  T
Q  216 cgaacgt 222  Q
     ||||||    
T  55298416 agaacgt 55298422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 8487496 - 8487319
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  |||| |||||| || || |  ||  |||| ||  || ||| |    
T  8487496 ctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatctaataaacaagggatgggggtaacaacatga 8487397  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||||||| || || |||||| |||| |||||||| ||||| | |||||||||||| |||| ||| |||||||||    
T  8487396 ttaaacatacggttattacgttcagtccaaacaacccaggcacataaaagccatattagttgcataaaagaacgtcta 8487319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 2631005 - 2631200
Alignment:
Q  30 agggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccgggga 129  Q
    |||||| ||| |||||  |||||| | |||| |||| || ||||| |||||||||| |||||||| ||||| ||  |||| |||||| |  || |  ||     
T  2631005 agggcttgaccaccactgctgagtcctaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaaggg 2631104  T
Q  130 gtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
     |||| ||  || ||| |||||||| ||| ||||| || ||||||||||||||||| ||||| |||||||||||||| |||| ||| |||||||||    
T  2631105 atgggggtaacaacatgattaaacaaacggttgttacgctcattccacacaacccatgcacatagaagccatattagttgcataaaagaacgtcta 2631200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 13159317 - 13159095
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    |||||||||  ||| |||||||| |||| ||   ||| |||||| |||| ||| |||| |||||||||||||| || |  ||||||  | ||||||||||    
T  13159317 ccaaacaagtaaaaaggctcgaccaccaactagtagtcccaaaaacaaacgtgacttt-ttagctttcagccacccaagggacaacgctataaccttatc 13159219  T
Q  117 caacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaac 216  Q
    |||||||  |||| |||   |  ||  |||||||||||| ||||| ||||| |||||| |||||||||| ||| ||||||||||||| ||||| |||||     
T  13159218 caacaacttgggaatggagctaacagaattattaaacattcgattatttcgctcattctacacaacccaggcaaaaagaagccatatgagctgaagaaat 13159119  T
Q  217 gaacgtctaactttaccaccacct 240  Q
    || |  ||| |||| |||||||||    
T  13159118 gagcacctagcttttccaccacct 13159095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 20669104 - 20669303
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgc 140  Q
    ||||| ||||||||||| || ||||  ||||||| ||||| |||| ||| ||||| || |||| ||||| ||||||||||||||  ||   |   ||| |    
T  20669104 accacatctgagtaccataaacaaacatggcttttttagccttcatccaccctaatgataacaatttaatcttatccaacaacctcgggacgtccgttac 20669203  T
Q  141 atcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    | ||||||||||||  || || || ||||| |||||||||| ||||| ||| |||| ||||| ||| |||||||| |||||| || |||||||| |||||    
T  20669204 aacattattaaacaggcggttattacgttcgttccacacaatccaagtacacagaatccataatagatgcagaaaggaacgtttagctttaccaacacct 20669303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 1121119 - 1121013
Alignment:
Q  88 caacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaag 187  Q
    |||||||| |||||||| || ||||| || ||||| |||||  || |||||    |||||||||||| |||||| ||||||||||||||||||| ||| |    
T  1121119 caacctaaggacaacatctttaccttgtctaacaaacgggggatgtgagttattacattattaaacagacgattatttcgttcattccacacaatccagg 1121020  T
Q  188 cacaaag 194  Q
    |||||||    
T  1121019 cacaaag 1121013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 42169565 - 42169466
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    ||||||||||||||||||| ||| |||||||||| || |||||| ||||  || | |  || ||||||||||||||||| || |||| |||||| |||||    
T  42169565 ccaaacaagctaaagggcttgaccaccacctctgcgtgccaaaaacaaacatgacatcttttgctttcagccaacctaacgataacaatttaactttatc 42169466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 20673433 - 20673511
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||||| || ||  |||||||||| |||||| | ||||| |||||||||||||| |||| ||| |||||||||    
T  20673433 attaaacatacggttattatgttcattccaaacaacctaggcacatagaagccatattagttgcataaaagaacgtcta 20673511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 53809562 - 53809658
Alignment:
Q  144 attattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    |||||| |||| ||| ||| | |||||||||||||||||||||| ||| |  ||||| || || ||||  ||||| ||| |||||||||||||||||    
T  53809562 attattgaacagacggttgatacgttcattccacacaacccaagtacacaatagccaaataagttgcatgaacgagcgtttaactttaccaccacct 53809658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 4525185 - 4525074
Alignment:
Q  5 gttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacat 104  Q
    |||||||  |||||| |||||| | ||| || ||| ||||| ||| |||| ||||| |||| |||||||| ||||||||||| ||  ||||||| ||||     
T  4525185 gttagccaatgcccagacaagccataggacttgaccaccacgtcttagtatcaaaaacaaaagtggcttttttagctttcagtcacgctaaagataacaa 4525086  T
Q  105 tttaaccttatc 116  Q
    ||||| ||||||    
T  4525085 tttaatcttatc 4525074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 25875198 - 25875140
Alignment:
Q  55 ccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    |||||| |||| || | ||| |||||||||| |||||||||||||||||| ||||||||    
T  25875198 ccaaaaacaaaggtagtttttttagctttcaaccaacctaaagacaacatcttaacctt 25875140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 5817696 - 5817615
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccgggga 129  Q
    ||||||||||||  |||| || | ||| |||||||||| |||| |||| |||||||| || |||||||| ||||| ||||||    
T  5817696 ctgagtaccaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacatcttgaccttatctaacaagcgggga 5817615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 31862188 - 31862410
Alignment:
Q  18 caaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatcc 117  Q
    |||||||||||||||| ||||| ||||  | |||||||||||| |||| ||| | || |||||||||||||| |||||||||| || |||||| || |||    
T  31862188 caaacaagctaaagggttcgaccaccaagtttgagtaccaaaaacaaaagtgacatttttagctttcagccatcctaaagacatcaatttaactttgtcc 31862287  T
Q  118 aacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacg 217  Q
    ||||| |||||| ||| | |||||  || ||||||||   |||| ||  |||||||||||| ||||||  ||||||||||||||||||| ||||  || |    
T  31862288 aacaatcggggaatggaaattgcaatatcattaaacaagtgattattatgttcattccacaaaacccagacacaaagaagccatattagttgcatgaaag 31862387  T
Q  218 aacgtctaactttaccaccacct 240  Q
    | |||||| |||| |||||||||    
T  31862388 accgtctagctttgccaccacct 31862410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 225
Target Start/End: Complemental strand, 10487420 - 10487244
Alignment:
Q  49 tgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattat 148  Q
    |||||||||||  |||| || ||||| |||||||||| |||| |||| |||||||| || |||||||| ||||| ||| || ||| ||||    ||||||    
T  10487420 tgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatcttgaccttatctaacaaacggagaatggaagttattacattat 10487321  T
Q  149 taaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||| |||||| ||||| ||||||||||||||||| |||||||||||||| || || |||| ||| |||||||||    
T  10487320 taaacagacgattatttcgctcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaacgtcta 10487244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 32917942 - 32918119
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| ||| |||| |||||||||||||||||||| |||| |||||| || || |  ||  |||| ||  || ||| |    
T  32917942 ctgagttccaaaaacaaaggtagcttttttaactttaagccaacctaaagacaacatcttaatcttatctaataaacaagggatgggggtaacaacatga 32918041  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||| ||| || |||||||||||||| |||||||| ||||| |||||||| ||||| |||| ||| || ||||||    
T  32918042 ttaaacagacggttatttcgttcattccaaacaacccaggcacatagaagccaaattagttgcataaaagaccgtcta 32918119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 34480549 - 34480758
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| ||||||||||||||||||||||||| ||  ||||||||||    
T  34480549 cccaaacaaacaagagggcttgaccaccactgctgagtgccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttat 34480648  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || |  ||  |||| ||  |  ||| |||||||| |||||| || ||||||||||| ||||||||  |||| ||||||||||| || |||| |||    
T  34480649 caagtaaacaagggatgggggtaaccacatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatataagttgcataaa 34480748  T
Q  216 cgaacgtcta 225  Q
     |||||||||    
T  34480749 agaacgtcta 34480758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 6020332 - 6020555
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    ||||||||||||||||||||||| ||||    | ||| ||||||| ||| || | ||| ||||||||||||||||||||||||||||| ||||| || |     
T  6020332 ccaaacaagctaaagggctcgaccaccattcttaagttccaaaagtaaaagtagattttttagctttcagccaacctaaagacaacatcttaactttgtt 6020431  T
Q  117 caacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaac 216  Q
     | ||| |||||  || ||||      |||||||||||  ||||| || || |||||||||||||||||  || |||| |||||||| || ||| ||||     
T  6020432 gagcaaacggggtatgtgagtgattatattattaaacaagcgattattacgctcattccacacaacccagacataaaggagccatataagttgctgaaaa 6020531  T
Q  217 gaacgtctaactttaccaccacct 240  Q
    |||| |||| ||||||| ||||||    
T  6020532 gaacatctagctttacctccacct 6020555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 6264713 - 6264539
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| |||||||||| |||||||||||||||||  ||||||||||  |  || |  ||  |||| ||  || ||| |    
T  6264713 ctgagttccaaaaacaaaagtagcttttttagctttcaaccaacctaaagacaacaacttaaccttataaagtaaacaagggatgggggtaacaacatga 6264614  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgt 222  Q
    ||||||| ||| || |||||||||||||| ||||||||  |||| |||||||||||||| |||| ||| ||||||    
T  6264613 ttaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagttgcataaaagaacgt 6264539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 34858240 - 34858058
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  |||| |||||    
T  34858240 cccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttat 34858141  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagc 198  Q
    | |  || | |||  | || ||  || |||  ||||||||||| || || ||||||||||| |||||||| ||||||||||||    
T  34858140 caagtaaacaggggataggggtaacaacatggttaaacatacggttattacgttcattccaaacaacccaggcacaaagaagc 34858058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 30510435 - 30510368
Alignment:
Q  173 tccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    ||||||||| ||||| ||| |||| ||| |||||||||||||| |||||| || |||||||| |||||    
T  30510435 tccacacaatccaagtacacagaatccaaattagctgcagaaaagaacgtttagctttaccaacacct 30510368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 30550775 - 30550708
Alignment:
Q  173 tccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    ||||||||| ||||| ||| |||| ||| |||||||||||||| |||||| || |||||||| |||||    
T  30550775 tccacacaatccaagtacacagaatccaaattagctgcagaaaagaacgtttagctttaccaacacct 30550708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 35123228 - 35123145
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaacc 124  Q
    ||||| ||| ||||||| || ||||  ||||||| | |||||||||||| ||||| || |||| ||||| ||||||||||||||    
T  35123228 accacatctaagtaccataaacaaacatggctttttcagctttcagccaccctaatgataacaatttaatcttatccaacaacc 35123145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 4399468 - 4399542
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagcc 88  Q
    ||||||||||| | | ||| || ||| ||||| ||||||| |||||| |||| |||||||| |||||||||||||    
T  4399468 tgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcttttttagctttcagcc 4399542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 15500161 - 15500108
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaa 101  Q
    |||||| |||||| |||| || ||||| |||||||| |||||||||||||||||    
T  15500161 ctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaa 15500108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 36928796 - 36928969
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||||| ||||  | ||||| |||||||||| ||||||||| |||||||| || ||||| || ||||| || ||  ||||||||  | |||||||||    
T  36928796 gtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgagggatgggagttataacattattaa 36928895  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| |||||||||||||||||||||||||||||||| ||||| || || |||| ||| |||||||||    
T  36928896 acagacgattatttcgttcattccacacaacccaagcacaaagtagccaaataagttgcataaaagaacgtcta 36928969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 225
Target Start/End: Original strand, 36305431 - 36305586
Alignment:
Q  70 gctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgtt 169  Q
    ||||| |||||||||| ||||||||| |||||||| || ||||| || ||||| ||| || ||||||||    |||||||||||| |||||| |||||||    
T  36305431 gcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacggagaatgggagttattacattattaaacagacgattatttcgtt 36305530  T
Q  170 cattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||||||||||||  ||||||| |||||||| || |||| ||| |||||||||    
T  36305531 cattccacacaacccagacacaaagtagccatataagttgcataaaagaacgtcta 36305586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 48073979 - 48073755
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  ||||||||||    
T  48073979 cccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaaccttat 48073880  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || | |||  |||| ||  || | | |||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| |||    
T  48073879 caagtaaacaggggatgggggtaacaacgtgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaa 48073780  T
Q  216 cgaacgtctaactttaccaccacct 240  Q
     |||||||||||   ||||||||||    
T  48073779 agaacgtctaacagcaccaccacct 48073755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 21527786 - 21527963
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||||||  |||| || ||||| ||||| |||| |||| |||| || ||||| || |||||||| ||||| |||||| ||||||||    |||||    
T  21527786 ctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggataacatcttgaccttatctaacaaacggggaatgggagttattacatta 21527885  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||  ||||| ||||| ||||||||||||||||| ||||| |||||||| || || |||| ||| |||||||||    
T  21527886 ttaaacagtcgattatttcgctcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacgtcta 21527963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 4644620 - 4644815
Alignment:
Q  30 agggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccgggga 129  Q
    ||||| |||| |||||  ||||||||||||  |||| || ||||| || ||||||| ||||||||| |||||||| || ||||| || ||||| | ||||    
T  4644620 agggcacgaccaccactgctgagtaccaaacacaaaagtagctttttttgctttcaaccaacctaaggacaacatcttgaccttgtctaacaaactggga 4644719  T
Q  130 gtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
     ||| ||||    |||||||||||| | |||| ||||||||||||||||||||||| ||||| |||||||| |  || |||| ||| |||||||||    
T  4644720 atggaagttattacattattaaacagatgattatttcgttcattccacacaacccaggcacagagaagccaaacaagttgcataaaagaacgtcta 4644815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 225
Target Start/End: Complemental strand, 14366118 - 14365963
Alignment:
Q  70 gctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgtt 169  Q
    ||||| |||||||||| |||| |||| |||||||| || ||||| || ||||| |||||| || |||||    |||||||||||| |||||| ||||| |    
T  14366118 gcttttttagctttcaaccaagctaaggacaacatcttgaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattatttcgct 14366019  T
Q  170 cattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||||||||||||||| |||||| | || || |||| ||| |||||||||    
T  14366018 cattccacacaacccaagcacagagaagctaaataagttgcataaaagaacgtcta 14365963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 32353844 - 32353635
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  |||| |||||    
T  32353844 cccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttat 32353745  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || |  ||  |||| ||  || ||| |||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| |||    
T  32353744 caagtaaacaagggatgggggtaacaacataattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaa 32353645  T
Q  216 cgaacgtcta 225  Q
     |||||||||    
T  32353644 agaacgtcta 32353635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 37530158 - 37530366
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    |||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| ||||||||||||||||||||||||| ||  |||||||||||    
T  37530158 ccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatc 37530257  T
Q  117 caacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaac 216  Q
     |  || |  ||  |||| ||  || ||| |||||||| |||||| ||  |||||||||| ||||||||  |||| |||||||||||||| |||| |||     
T  37530258 aagtaaacaagggatgggggtaacaacatgattaaacaaacgattattaagttcattccaaacaacccagacacatagaagccatattagttgcataaaa 37530357  T
Q  217 gaacgtcta 225  Q
    |||||||||    
T  37530358 gaacgtcta 37530366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 34854189 - 34853963
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    |||||| |||| ||||||| || ||| |||||||||  ||||||||| ||||  |||| || |||||||||||||| |||| ||| |||| |||||||||    
T  34854189 tgcccagacaatctaaaggacttgaccaccacctctacgtaccaaaaacaaacatggcctttttagctttcagccaccctagagataacaatttaacctt 34854090  T
Q  114 atccaacaaccg-gggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcag 212  Q
    ||| ||||  || |||| |  | |||  |  |||||| || | ||| ||||| |||||||||||||||||||||| |||||  || || ||||||||||     
T  34854089 atctaacaggcgagggactatg-gttatagtattattgaataaacggttgttacgttcattccacacaacccaagaacaaaatagtcaaattagctgcat 34853991  T
Q  213 aaacgaacgtctaactttaccaccacct 240  Q
     ||||||||| || |||||||| |||||    
T  34853990 gaacgaacgtttagctttaccaacacct 34853963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 3692234 - 3692429
Alignment:
Q  30 agggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccgggga 129  Q
    |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||| ||  |||| |||||| |  || |  ||     
T  3692234 agggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttatctagtaaacaaggg 3692333  T
Q  130 gtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
     |||| ||  || ||| |||||||| ||| ||| | || ||||||||||||||||| ||||| |||||||||||||| |||| ||| |||||||||    
T  3692334 atgggggtaacaacatgattaaacaaacggttgctacgctcattccacacaacccaggcacatagaagccatattagttgcataaaagaacgtcta 3692429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 47115917 - 47116090
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||||||||||  | ||||| |||||||||| |||  |||| |||||||| || ||||| ||  |||| | |||| || |||||    |||||||||    
T  47115917 gtaccaaaagcaaaaatagcttttttagctttcaaccattctaaggacaacatctttaccttgtctgacaaacagggaatgagagttattacattattaa 47116016  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| ||| |||||||||||||||| || ||||||| ||| ||||| |  |||| ||| |||||||||    
T  47116017 acagacgattattttgttcattccacacaactcaggcacaaaaaagtcatataaattgcataaaagaacgtcta 47116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 44929956 - 44930052
Alignment:
Q  144 attattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    ||||||||||||||| ||||| ||||| ||||||| |||| ||| |||||| ||||| ||||| || |||||||||||  || |||||||| |||||    
T  44929956 attattaaacatacggttgttgcgttcgttccacaaaaccaaagtacaaaggagccaaattagttgtagaaacgaacgcttagctttaccaacacct 44930052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 48266205 - 48266081
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||| |||| |||| |||||||| || |||||  | ||||| |||||| || |||||    |||||||||||| |||||| ||||| |||||||    
T  48266205 ttagctttcaaccaagctaaggacaacatcttgaccttgcctaacaaacggggaatgagagttattacattattaaacagacgattatttcgctcattcc 48266106  T
Q  176 acacaacccaagcacaaagaagcca 200  Q
    ||||||||||  |||| ||||||||    
T  48266105 acacaacccagacacagagaagcca 48266081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 37139529 - 37139457
Alignment:
Q  160 ttgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttac 232  Q
    ||||||||||||||||| ||||||||| |||| || ||||| ||||||||||| ||||| ||| || ||||||    
T  37139529 ttgtttcgttcattccagacaacccaaacacacaggagccagattagctgcaggaacgaccgtttagctttac 37139457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 38231313 - 38231489
Alignment:
Q  49 tgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattat 148  Q
    ||||| |||||| | || || ||||| |||||||||| |||||||| ||||||||  |||| |||||| |  || |  ||  |||| ||  || ||| ||    
T  38231313 tgagtcccaaaaacgaaggtagcttttttagctttcaaccaacctagagacaacagcttaatcttatctagtaaacaagggatgggggtaacaacatgat 38231412  T
Q  149 taaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||| || || ||||||||||| ||||| || ||||| ||||| |||||||| |||| ||| |||||||||    
T  38231413 taaacatacggttattacgttcattccaaacaactcaggcacatagaagtcatattagttgcataaaagaacgtcta 38231489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 14119412 - 14119567
Alignment:
Q  71 ctttcttagctttcagccaacctaaa-gacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgtt 169  Q
    |||| ||||||||||||||||||||| |||||||| |||| |||||| |  || |  ||   ||| ||  || ||| |||||||| |||||| |||||||    
T  14119412 cttttttagctttcagccaacctaaaagacaacatcttaatcttatctagtaaacaagggacgggggtaacaacatgattaaacagacgattatttcgtt 14119511  T
Q  170 cattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||| ||||||||  |||| | |||||||||||| |||| ||| || ||||||    
T  14119512 cattccaaacaacccagacacataaaagccatattagttgcataaaagaccgtcta 14119567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 30971165 - 30970971
Alignment:
Q  6 ttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacatt 105  Q
    ||||||| | ||||| |||| ||||||||| ||| |||||  |||||| ||||||| |||  || | || ||||||| |||||||||||||||||| |      
T  30971165 ttagcctatacccaagcaagttaaagggctagaccaccactgctgagttccaaaagtaaaaatgacatttttagcttgcagccaacctaaagacaataac 30971066  T
Q  106 ttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagcca 200  Q
    |||| |||||  | ||  | |||| |||||||   | |||| |||||||  ||| | || || |||| ||||||||||||||||||||| |||||    
T  30971065 ttaatcttataaagcagacagggaatgggagtaaaaacattgttaaacaatcgactattgcgctcatgccacacaacccaagcacaaaggagcca 30970971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 25639974 - 25639888
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagtt 138  Q
    ||||||||| |||| || |||||  ||||||||| | ||| ||| |||||||| ||||||||||| ||||| |||||| || |||||    
T  25639974 gtaccaaaaacaaaagtagcttttctagctttcaactaacttaaggacaacatcttaaccttatctaacaaacggggaatgagagtt 25639888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 43810415 - 43810511
Alignment:
Q  28 aaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaacc 124  Q
    |||||||| ||| ||||||| | ||||||||  | ||||||  ||||  ||||||||| |||||||||||||||   ||| || |||||||||||||    
T  43810415 aaagggcttgaccaccacctatcagtaccaagcgaaaatgtaacttttctagctttcaaccaacctaaagacaagtattttactttatccaacaacc 43810511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 28675478 - 28675252
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    ||||||||||| ||||||| |||||| |||||  ||| ||||| ||| |||| || ||||| ||| |||||| ||| |||||||||||||| ||||||||    
T  28675478 tgcccaaacaaactaaaggactcgaccaccactactgcgtaccgaaaacaaaagtagcttttttaactttcaaccagcctaaagacaacatcttaacctt 28675379  T
Q  114 atccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcaga 213  Q
     || ||||| || ||| |||||||  || |||||||||| |  ||||| ||||||| |||||||||||| ||  |||| ||||| || || || |||| |    
T  28675378 gtctaacaatcgaggaatgggagtaacaacattattaaataggcgattatttcgttaattccacacaacacagacacacagaagtcaaatgagttgcata 28675279  T
Q  214 aacgaacgtctaactttaccaccacct 240  Q
    || ||||||||| |||||||| |||||    
T  28675278 aaagaacgtctagctttaccatcacct 28675252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 30167856 - 30167683
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    |||||| || |||| || |||||  ||||||||| ||||||||| |||||||| ||||| || || ||||| |||||| || |||||    |||||||||    
T  30167856 gtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaactttgtctaacaaacggggaatgagagttattacattattaa 30167757  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| || |||||||||||||||||||| ||||||||||||||||| || |||| ||| |||||||||    
T  30167756 acagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtcta 30167683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 238
Target Start/End: Original strand, 9378726 - 9378912
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||| | |||| || ||||| ||| |||| |||||||||||||||||||| |||||||| || || || |||||  |||||||  || |||||||||    
T  9378726 gtaccaataacaaaggtagcttttttaacttttagccaacctaaagacaacatcttaaccttgtctaataaacgggggatgggagtaacaacattattaa 9378825  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccac 238  Q
    ||| ||||| ||||| ||||||||| |||||||| ||||| ||||| ||||| || |||| ||| ||||| ||| | ||||||||||    
T  9378826 acagacgatagtttcattcattccaaacaacccaggcacacagaagtcatatgagttgcataaaagaacgactatcattaccaccac 9378912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 9163665 - 9163452
Alignment:
Q  27 taaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccgg 126  Q
    |||||| || ||| ||||| ||||||||||| || ||||  ||| ||| |||||||||||||| |||||||| |||| ||||| ||||||||||||||      
T  9163665 taaaggacttgaccaccacatctgagtaccataaacaaacatggtttttttagctttcagccaccctaaagataacaatttaatcttatccaacaacctc 9163566  T
Q  127 ggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaa 226  Q
    ||       ||| || ||||||||||||  || || || |||||||||||||||| ||||| |||||||| ||| |||||||| ||||| | |||| ||     
T  9163565 gggacatccgttacaacattattaaacaggcggttattacgttcattccacacaatccaagtacaaagaatccagattagctgtagaaaggcacgtttag 9163466  T
Q  227 ctttaccaccacct 240  Q
    |||||||| |||||    
T  9163465 ctttaccaacacct 9163452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 49732448 - 49732271
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||||||  |||| || ||||| |||||||||| |||| |||| |||||||| || ||||| || ||||| |||||| || |||||    |||||    
T  49732448 ctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatcttgaccttgtctaacaaacggggaatgagagttattacatta 49732349  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||| |||||| ||||| || |||||||||||||  ||||| |||||||| || || |||| ||| |||||||||    
T  49732348 ttaaacagacgattatttcgctcgttccacacaacccgggcacagagaagccaaataagttgcataaaagaacgtcta 49732271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 13448131 - 13448280
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||| |||| |||| ||||||| ||| |||||  | ||||| |||| | ||||||||    |||||||||||| |||||| |||||||||||||    
T  13448131 ttagctttcaaccaagctaaggacaacaatttgaccttgcctaacaagcgggaaatgggagttattacattattaaacagacgattatttcgttcattcc 13448230  T
Q  176 acacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||| || ||||| |||||||| || || |||| ||| |||||||||    
T  13448231 acacaactcaggcacagagaagccaaataagttgcataaaagaacgtcta 13448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 2814015 - 2813838
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  |||| |||||| |  || |  ||  |||| ||  || ||| |    
T  2814015 ctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttatctagtaaacaagggatgggggtaacaacatga 2813916  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||||||| || || ||||||||||| || ||||| ||||| ||||| |||||||| |||| |||||||||||||    
T  2813915 ttaaacatacggttattacgttcattccagactacccaggcacatagaagtcatattagttgcataaacgaacgtcta 2813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 23601497 - 23601575
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| ||| |||||||||    
T  23601497 attaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgtcta 23601575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 7146666 - 7146843
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||| ||  |||| |||||| |  || |  ||  |||| ||  || ||| |    
T  7146666 ctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacatcagcttaatcttatctagtaaacaagggatgggggtaacaacatga 7146765  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||| || || || ||||||||||| |||||||| ||||||||||||||||| || |||| ||| |||||||||    
T  7146766 ttaaacatccggttattacgttcattccaaacaacccaggcacaaagaagccatataagttgcaaaaaagaacgtcta 7146843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 25873627 - 25873454
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| ||||  | ||||| ||||||||||||||||||||||||| ||  ||||||||||| |  || |  ||  |||| ||  || ||| |    
T  25873627 ctgagttccaaaaacaaagatagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaaacacgggatgggggtaacaacatga 25873528  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacg 221  Q
    ||||||| |||||| || ||||||||||| ||||||||  |||| ||||||||||| || |||| ||| |||||    
T  25873527 ttaaacagacgattattacgttcattccaaacaacccagacacatagaagccatatgagttgcataaaagaacg 25873454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 26009779 - 26009838
Alignment:
Q  160 ttgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaa 219  Q
    |||||||||| |||||| |||||||||||||| || ||||||||||||||||| ||||||    
T  26009779 ttgtttcgttaattccagacaacccaagcacacaggagccatattagctgcaggaacgaa 26009838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 6176894 - 6176816
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||||| || || ||||||||||| |||||||| ||||| | |||||||||||| |||| ||| |||||||||    
T  6176894 attaaacatacggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcataaaagaacgtcta 6176816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 18369515 - 18369397
Alignment:
Q  4 agttagcctttgcccaaacaagctaaa-gggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaac 102  Q
    ||||||||  ||||||||||| ||||| ||||| ||| |||||||||| |||||| |  ||||    || || ||||||||||||||||||||||| |||    
T  18369515 agttagccaatgcccaaacaatctaaaagggcttgaccaccacctctgcgtaccatagacaaacacagcctttttagctttcagccaacctaaagataac 18369416  T
Q  103 attttaaccttatccaaca 121  Q
    | |||||||||||| ||||    
T  18369415 aatttaaccttatctaaca 18369397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 29309132 - 29309210
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||||||| ||||| || |||||||||||||||||  |||| ||||| |||||||| |||| ||| |||||||||    
T  29309132 attaaacatacggttgttacgctcattccacacaacccagacacatagaagtcatattagttgcataaaagaacgtcta 29309210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 54440671 - 54440458
Alignment:
Q  5 gttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacat 104  Q
    |||||||  ||||||||||||| ||||| || ||| ||||||| |||||||||||| ||||| ||||||| ||| |||||| |||  |||| || ||||     
T  54440671 gttagccaatgcccaaacaagccaaaggacttgaccaccacctatgagtaccaaaatcaaatatggcttttttacctttcatccacactaacgataacaa 54440572  T
Q  105 tttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatatt 204  Q
    ||| | |||||| |  ||||  |||     |||  || ||||||||||||  |||||||| ||||| ||||||   |||||||  ||||||||||| |||    
T  54440571 tttgatcttatcaagtaacctaggaacatcagtaacaacattattaaacagtcgattgttgcgttcgttccacgacacccaagtgcaaagaagccaaatt 54440472  T
Q  205 agctgcagaaacga 218  Q
    | ||| ||||||||    
T  54440471 aactgaagaaacga 54440458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 36708466 - 36708576
Alignment:
Q  4 agttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaaca 103  Q
    ||||||||  |||||||||||||||||||||| ||| |||| ||||| |||||| || ||||     | || |||||||||||||| || ||||| ||||    
T  36708466 agttagccaatgcccaaacaagctaaagggcttgaccaccatctctgcgtaccataaacaaacacaacatttttagctttcagccaccccaaagataaca 36708565  T
Q  104 ttttaacctta 114  Q
     ||||||||||    
T  36708566 atttaacctta 36708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 14868333 - 14868245
Alignment:
Q  15 gcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaaca 103  Q
    |||||||||| | | ||| || ||| ||||| ||||||| |||||| |||| ||||| || ||||||||||||||| ||||||| ||||    
T  14868333 gcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccaagctaaagataaca 14868245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 19824317 - 19824234
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaacc 124  Q
    ||||| |||||||| || || ||||  ||||||| |||||||||||||| ||||| || | || ||||| ||||||||||||||    
T  19824317 accacatctgagtatcataaacaaacatggcttttttagctttcagccaccctaatgatatcaatttaatcttatccaacaacc 19824234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 32004633 - 32004743
Alignment:
Q  76 ttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattcc 175  Q
    |||||||||| |||| |||| |||||||| || ||||| || ||||| |||||| || |||||    |||||||||||| |||||| ||||| ||  |||    
T  32004633 ttagctttcaaccaagctaaggacaacatcttgaccttgtctaacaaacggggaatgagagttattgcattattaaacagacgattatttcgctctatcc 32004732  T
Q  176 acacaacccaa 186  Q
    |||||| ||||    
T  32004733 acacaatccaa 32004743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27497356 - 27497428
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagcca 89  Q
    |||||||||| ||||| || ||| ||||| ||||| | |||||| |||| ||||| || ||||||||||||||    
T  27497356 ccaaacaagccaaaggacttgaccaccacatctgaattccaaaaacaaaagtggcatttttagctttcagcca 27497428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 46909097 - 46909021
Alignment:
Q  133 ggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctg 209  Q
    |||||| || ||||||||||||  | ||||||||| ||| |||| |  |||||||||||||||||||| || |||||    
T  46909097 ggagttacaacattattaaacagcctattgtttcgctcagtccataacacccaagcacaaagaagccaaataagctg 46909021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 7451981 - 7452154
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    ||||||||| ||||  | ||||| |||||||||| ||||||||| |||||||| || ||||| || ||||| |||||  ||||||||  | |||||||||    
T  7451981 gtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgggggatgggagttataacattattaa 7452080  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| ||| |||||||||||||||||||  ||||||| |||||||| || |||| ||| |||||||||    
T  7452081 acagacgattattttgttcattccacacaacccagtcacaaagtagccatataagttgcataaaagaacgtcta 7452154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8639325 - 8639447
Alignment:
Q  1 agcagttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttctt-agctttcagccaacctaaagac 99  Q
    |||||||||||  ||||||||||| |||||||||||||| |||||||||| ||| ||||| ||||| ||  ||| || |||||||| |||||||||||||    
T  8639325 agcagttagccaatgcccaaacaaactaaagggctcgaccaccacctctgcgtatcaaaaacaaatttgattttttttagctttcaaccaacctaaagac 8639424  T
Q  100 aacattttaaccttatccaacaa 122  Q
    |||| ||||||||||||||||||    
T  8639425 aacaatttaaccttatccaacaa 8639447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 39483289 - 39483130
Alignment:
Q  14 tgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaacctt 113  Q
    |||||||||| ||||||||||||||| ||||  ||||||||||||||  ||| ||| |||| |||||||||||||| |||| ||||| ||  ||||| ||    
T  39483289 tgcccaaacatgctaaagggctcgaccaccaagtctgagtaccaaaaataaaagtgacttttttagctttcagccaccctagagacatcaacttaacttt 39483190  T
Q  114 atccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcatt 173  Q
     ||||||||||||| | ||| | |||||  || |||||||| |||||| || ||||||||    
T  39483189 gtccaacaaccgggaaatggaaattgcaatatcattaaacagacgattattacgttcatt 39483130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 27083213 - 27083432
Alignment:
Q  21 acaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaac 120  Q
    ||||||||||||||| ||  ||||||||||||||| |||| ||||  || | || ||| ||||||| || ||||  || |||| |||||||||||| |||    
T  27083213 acaagctaaagggcttgatcaccacctctgagtacgaaaaacaaacatgacatttttaactttcagtcatcctatggataacaatttaaccttatctaac 27083312  T
Q  121 aaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaac 220  Q
    |  || |||   |  ||| ||  |||||| || ||||| ||||| |||||||||||||||||||||| ||| || || || ||||||||||| |||||||    
T  27083313 agtcgaggaacagaggttacaatattattgaaaatacggttgttacgttcattccacacaacccaagtacacagtagtcaaattagctgcaggaacgaac 27083412  T
Q  221 gtctaactttaccaccacct 240  Q
    || || |||||||| |||||    
T  27083413 gtttagctttaccaacacct 27083432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 7555167 - 7555258
Alignment:
Q  143 cattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttacca 234  Q
    |||||||||||| ||| || || ||||| |||| || ||| |||| ||||||||| || |||||||||||||||||||||||| ||||||||    
T  7555167 cattattaaacagacggttattacgttcgttccgcaaaactcaagtacaaagaagtcagattagctgcagaaacgaacgtctagctttacca 7555258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 16421425 - 16421347
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    |||||||| ||| ||||| || |||||||||||||||||| |||| |||||||||||||| |||| ||| |||||||||    
T  16421425 attaaacaaacggttgttacgctcattccacacaacccaaacacatagaagccatattagttgcataaaagaacgtcta 16421347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 30501688 - 30501785
Alignment:
Q  143 cattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    |||||||||||| ||| || || ||||||||||||| ||||||||||||||||||||| ||||  ||||  ||| ||||  ||||||||||| |||||    
T  30501688 cattattaaacagacggttattacgttcattccacaaaacccaagcacaaagaagccagattaattgcaagaacaaacgcttaactttaccaacacct 30501785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 2871914 - 2871990
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtc 223  Q
    |||||||||  |||| || ||||||||||| |||||||| ||||||||||||||||| || |||| ||| |||||||    
T  2871914 attaaacatctgattattacgttcattccaaacaacccaggcacaaagaagccatataagttgcataaaagaacgtc 2871990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 19385225 - 19385049
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||| ||  |||| || ||||| |||||||| | ||||  ||| |||||||| || ||||| || || || |||||| || |||||    |||||    
T  19385225 ctgagtaccgaacacaaaagtagcttttttagcttttaaccaagataaggacaacatcttgaccttgtctaagaaacggggaatgagagttattacatta 19385126  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtct 224  Q
    ||||||| |||||| |||||||||||||||||||| || ||||| | |||| | || || |||| ||| ||||||||    
T  19385125 ttaaacagacgattatttcgttcattccacacaacacaggcacagataagctaaataagttgcataaaagaacgtct 19385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 36897608 - 36897763
Alignment:
Q  79 gctttcagccaacctaaagacaacattttaaccttatccaaca-accggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccac 177  Q
    ||||| ||||| |||| |||||||| ||||||||| || |||| || ||||| |   |||| || ||||||| ||||  || |||| |||||| ||||      
T  36897608 gctttaagccaccctagagacaacaatttaaccttgtctaacagacgggggactac-agttacaacattattgaacaaccggttgtatcgttcgttccgt 36897706  T
Q  178 acaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttacca 234  Q
    |||||||||| ||| |||||||| ||||||||||| || |||||| |||||||||||    
T  36897707 acaacccaagtacacagaagccaaattagctgcaggaatgaacgtttaactttacca 36897763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 31217048 - 31216941
Alignment:
Q  6 ttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacatt 105  Q
    ||||||| |||||||||||| ||||||||| ||| ||||   |||||| ||| ||| |||  || | || |||||||| ||||||||||||||||||||     
T  31217048 ttagcctatgcccaaacaagttaaagggctagaccaccattgctgagttccataagtaaaaatgacatttttagcttttagccaacctaaagacaacatc 31216949  T
Q  106 ttaacctt 113  Q
    || |||||    
T  31216948 ttgacctt 31216941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 40467408 - 40467603
Alignment:
Q  5 gttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacat 104  Q
    |||||||  |||||| |||| |||| ||||| |||||||| ||||| |||||| || ||||  | |  |||||||||||||||||  ||||||| ||||     
T  40467408 gttagccaatgcccagacaatctaacgggcttgactaccatctctgcgtaccataaacaaacattgtcttcttagctttcagccactctaaagataacaa 40467507  T
Q  105 tttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagcca 200  Q
    ||| |||||||| ||||| || ||||    |||  ||  |||||| |||| ||| ||||| ||||||||||| | |||||||| ||| | ||||||    
T  40467508 tttgaccttatctaacaagcgaggagcaatagtaacagtattattgaacaaacggttgttacgttcattccatataacccaagaacacaaaagcca 40467603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 43613621 - 43613442
Alignment:
Q  6 ttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacatt 105  Q
    ||||||| |||||| ||||||||||||||| ||| ||||| |||| || ||| |   |||  |||| || ||||| |||||||| ||| |||| |||| |    
T  43613621 ttagcctatgcccagacaagctaaagggctagaccaccacatctgggtgccatacataaacatggcatttttagccttcagccaccctgaagataacaat 43613522  T
Q  106 ttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaaccca 185  Q
    || |||||||| ||||  || |||    | ||| ||  ||||||||||| ||| ||||| ||||||||||||||||||||    
T  43613521 ttgaccttatctaacagacgaggaacatgtgttacaatattattaaacagacggttgttacgttcattccacacaaccca 43613442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 6900633 - 6900707
Alignment:
Q  160 ttgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttacca 234  Q
    ||||||||||| ||||| |||||||||| ||| |||||||| ||||||||||| || || ||| || ||||||||    
T  6900633 ttgtttcgttcgttccatacaacccaagtacacagaagccaaattagctgcaggaatgagcgtttagctttacca 6900707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 412782 - 412718
Alignment:
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgca 211  Q
    |||||||| ||| || |||||||||||||| ||||||||  ||||||||||| ||||||| ||||    
T  412782 attaaacagacggttatttcgttcattccaaacaacccagacacaaagaagcaatattagttgca 412718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 43254284 - 43254200
Alignment:
Q  5 gttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagcca 89  Q
    |||||||  ||||||||||||  ||||| || ||| ||||| ||||||| |||||| |||| ||||| || ||||||||||||||    
T  43254284 gttagccaatgcccaaacaagtcaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 43254200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 30261289 - 30261381
Alignment:
Q  24 agctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    |||||||||||| ||| |||||  ||||||||||||| ||||| || | || |||||||||||  | |||  ||| |||| ||||||||||||    
T  30261289 agctaaagggcttgaccaccactactgagtaccaaaaacaaatatgacatttttagctttcagttacccttgagataacaatttaaccttatc 30261381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 33547465 - 33547674
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||||| |||||||| ||||||||  ||||||||||    
T  33547465 cccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagcttaaccttat 33547564  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || | |||  |||| ||  || ||| |||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| |||    
T  33547565 caagtaaacaggggatgggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaa 33547664  T
Q  216 cgaacgtcta 225  Q
     |||||||||    
T  33547665 agaacgtcta 33547674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 45421147 - 45421320
Alignment:
Q  52 gtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaa 151  Q
    |||||| || |||| || |||||  ||||||||| ||||||||| |||||||| ||||| || || ||||| || ||| || |||||    |||||||||    
T  45421147 gtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaactttgtctaacaaacgtggaatgtgagttattacattattaa 45421246  T
Q  152 acatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||| |||||| || |||||||||||||||||||| ||||||||||||||||| || |||| ||| |||||||||    
T  45421247 acagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaacgtcta 45421320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 13549749 - 13549926
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    |||||| |||||| |||| || ||||| ||| |||| || ||||||||||||||||| |||| |||||| || || |  ||  |||| ||  || ||| |    
T  13549749 ctgagttccaaaaacaaaggtagcttttttaactttaagtcaacctaaagacaacatcttaatcttatctaataaacaagggatgggggtaacaacatga 13549848  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||| ||| || ||||||||||||||||||||||| |||||||||||||| || || |||| ||| |||||||||    
T  13549849 ttaaacagacggttatttcgttcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaacgtcta 13549926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 31594147 - 31594336
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| ||||||||||||||||||||||||| || |||||||||||    
T  31594147 cccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaatttaaccttat 31594246  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatatta 205  Q
    | |  || |  ||  |||| ||  || ||| |||||||| ||| || |||||||||||||| ||||||||  |||| |||||||||||||    
T  31594247 caagtaaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccaaacaacccagacacatagaagccatatta 31594336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 31086147 - 31085960
Alignment:
Q  53 taccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaa 152  Q
    |||||||| ||||||| ||||| |||||||||| | |||||||||||||| | |||| ||| || || || |  ||  |||||||  || ||||||||||    
T  31086147 taccaaaaacaaatgtagcttttttagctttcaactaacctaaagacaacgtcttaatcttgtctaataaacacgggatgggagtaacaacattattaaa 31086048  T
Q  153 catacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    ||| || || ||||||| |||||| |||||||| ||||| | ||| ||||| || |||| ||| ||||||||| | ||||||||||||    
T  31086047 catgcggttatttcgttaattccaaacaacccaggcacacaaaaggcatatgagttgcataaaagaacgtctagcattaccaccacct 31085960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 26681507 - 26681669
Alignment:
Q  49 tgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattat 148  Q
    ||||| |||||| |||| || ||||| ||||||||||||||||||||||||||||  ||||||||||| |  || |  ||  |||| ||  || ||| ||    
T  26681507 tgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacaacaacttaaccttatcaagtaaacaagggatgggggtaacaacatgat 26681606  T
Q  149 taaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgca 211  Q
    |||||| ||| || |||||||||||||| ||||||||  |||| |||||||||||||| ||||    
T  26681607 taaacagacggttatttcgttcattccaaacaacccagacacatagaagccatattagttgca 26681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 31774267 - 31774458
Alignment:
Q  6 ttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacatt 105  Q
    ||||||| | ||||| |||| ||||||||| ||| |||||  |||||| ||| ||| |||  |||| || |||||||||||| | ||||||||||||||     
T  31774267 ttagcctatacccaagcaagttaaagggctagaccaccactgctgagttccataagtaaaaatggcatttttagctttcagcaatcctaaagacaacatc 31774366  T
Q  106 ttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaag 197  Q
    ||||||||||| | ||| | |||| |||||||   | |||| |||||||  ||| | || |  |||||||||||||| ||||||||||||||    
T  31774367 ttaaccttatcaagcaaacagggaatgggagtaataacatttttaaacaagcgactattgccctcattccacacaactcaagcacaaagaag 31774458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 26180409 - 26180248
Alignment:
Q  79 gctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccaca 178  Q
    ||||||||| |||||||||||| ||| |||||||| || || || |||||  |||||||  || |||||||| | |  ||||| ||||||| ||| || |    
T  26180409 gctttcagctaacctaaagacatcatcttaaccttgtctaataaacgggggatgggagtaacaacattattataaaggcgattatttcgtttatttcata 26180310  T
Q  179 caacccaagcacaaagaagccatattagctgcagaaacgaacgtctaactttaccaccacct 240  Q
    |||| || ||||| ||||||||||| || |||||||| ||||| ||| | ||||||||||||    
T  26180309 caactcaggcacacagaagccatatgagttgcagaaaagaacgcctagcattaccaccacct 26180248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 26490800 - 26490664
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||  ||||  || |||| ||||||||||||||  | ||||| |||| ||||| |||||    
T  26490800 cccaaacaagccaaagggcttgactaccacttctgagtaccaaatacaaacatgacttttttagctttcagccatgccaaagataacaatttaatcttat 26490701  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaa 152  Q
    | | ||||| ||||||   |||| || ||||||||||    
T  26490700 caagcaacctgggagtatcagttacaacattattaaa 26490664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 43627123 - 43627301
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttctt-agctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatt 146  Q
    |||||| |||||| ||||||| ||||| || |||||||| |||||||| ||||||||  |||| |||||| |  || |  ||  |||| ||  || |||     
T  43627123 ctgagtcccaaaaacaaatgtagctttttttagctttcaaccaacctagagacaacagcttaatcttatctagtaaacaagggatgggggtaacaacatg 43627222  T
Q  147 attaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtcta 225  Q
    ||||||||| || || || ||||||||||| |||||||| ||||||||||||||||| || |||| ||| |||||||||    
T  43627223 attaaacatccggttattacgttcattccaaacaacccaggcacaaagaagccatataagttgcataaaagaacgtcta 43627301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 9949811 - 9949602
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  ||||||  ||||| |||| || ||||| |||||||| |||||||||||||||| ||  ||||||||||    
T  9949811 cccaaacaaacaagagggcttgaccaccactgctgagtgtcaaaaacaaaggtagcttttttagcttttagccaacctaaagacatcaacttaaccttat 9949712  T
Q  116 ccaacaaccggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaa 215  Q
    | |  || |  ||  |||| ||  |  ||| |||||||| |||||| || ||||||||||| ||||||||  |||| ||||||||||| || |||| |||    
T  9949711 caagtaaacaagggatgggggtaaccacatgattaaacagacgattattacgttcattccaaacaacccagacacatagaagccatataagttgcataaa 9949612  T
Q  216 cgaacgtcta 225  Q
     |||||||||    
T  9949611 agaacgtcta 9949602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 4040582 - 4040494
Alignment:
Q  28 aaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    ||||| || ||| ||||||| | |||||||||| ||||||||||||| ||||||||||||||  |||| || |||| ||||| ||||||    
T  4040582 aaaggacttgaccaccacctatcagtaccaaaaacaaatgtggcttttttagctttcagccacgctaacgataacagtttaatcttatc 4040494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 22052220 - 22052320
Alignment:
Q  16 cccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttat 115  Q
    ||||||||| | | |||||| ||| |||||  |||||| |||||| |||| || ||||| |||||||| |||||||||||||||||||  |||| |||||    
T  22052220 cccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaacaacttaatcttat 22052319  T
Q  116 c 116  Q
    |    
T  22052320 c 22052320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 36803506 - 36803700
Alignment:
Q  17 ccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    ||||||||| ||||| ||| ||| |||||||||| || |||||| ||||  || | || || ||||||||||||||||| || |||| |||||| |||||    
T  36803506 ccaaacaagttaaagagcttgaccaccacctctgcgtgccaaaaacaaacatgacattttttgctttcagccaacctaatgataacaatttaactttatc 36803605  T
Q  117 caaca-accggggagtgggagttgcatcattattaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgca 211  Q
     |||| || ||||| |    ||| || ||||||||||||   | ||||||||||| ||||| |||||||||| ||  |||||||| || |||||||    
T  36803606 taacagacagggga-taaaggttacaacattattaaacagttggttgtttcgttcgttccagacaacccaagaactcagaagccaaatcagctgca 36803700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 3119549 - 3119633
Alignment:
Q  5 gttagcctttgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagcca 89  Q
    |||||||  ||||||||||||| ||| | || ||| ||||| ||||||| |||||| |||| ||||| || ||||||||| ||||    
T  3119549 gttagccaatgcccaaacaagccaaatgacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttccgcca 3119633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 135151 - 134975
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||||||  |||| || ||||| ||||| |||| |||| |||| |||||||| || |||||||| ||||| |||||| ||||||||    |||||    
T  135151 ctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagttattacatta 135052  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtct 224  Q
    |||||||  ||||| ||||| |||||| |||||||||||||||| |||||||| || || |||| ||| ||||||||    
T  135051 ttaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 134975  T

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Target: scaffold0002 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 312978 - 312802
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||||||  |||| || ||||| ||||| |||| |||| |||| |||||||| || |||||||| ||||| |||||| ||||||||    |||||    
T  312978 ctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagttattacatta 312879  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtct 224  Q
    |||||||  ||||| ||||| |||||| |||||||||||||||| |||||||| || || |||| ||| ||||||||    
T  312878 ttaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 312802  T

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Target: scaffold0002; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 328432 - 328256
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaaccggggagtgggagttgcatcatta 147  Q
    ||||||||||||  |||| || ||||| ||||| |||| |||| |||| |||||||| || |||||||| ||||| |||||| ||||||||    |||||    
T  328432 ctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggagttattacatta 328333  T
Q  148 ttaaacatacgattgtttcgttcattccacacaacccaagcacaaagaagccatattagctgcagaaacgaacgtct 224  Q
    |||||||  ||||| ||||| |||||| |||||||||||||||| |||||||| || || |||| ||| ||||||||    
T  328332 ttaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 328256  T

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Target: scaffold0308 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 16280 - 16363
Alignment:
Q  41 accacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaacc 124  Q
    ||||| ||||||||||| || ||||  ||||||| |||||||||||||| ||||| || |||| ||||| ||||||||||||||    
T  16280 accacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataacaatttaatcttatccaacaacc 16363  T

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Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 16144 - 16049
Alignment:
Q  21 acaagctaaagggctcgactaccacctctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatc 116  Q
    ||||||||||||||| ||| ||||||||||  |||||||| ||||  || | ||||||||||||||||| |||| ||  |||| ||| ||||||||    
T  16144 acaagctaaagggcttgaccaccacctctgtataccaaaaacaaacatgacattcttagctttcagccaccctagagctaacaatttgaccttatc 16049  T

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Target: scaffold0220 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 22728 - 22654
Alignment:
Q  48 ctgagtaccaaaagcaaatgtggctttcttagctttcagccaacctaaagacaacattttaaccttatccaacaa 122  Q
    ||||||||||||  |||| |||| ||| ||||||||||  ||| |||||||||||||||| |||| ||| |||||    
T  22728 ctgagtaccaaacacaaaagtggtttttttagctttcaatcaagctaaagacaacattttgacctaatctaacaa 22654  T

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