View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14912_high_31 (Length: 250)

Name: NF14912_high_31
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14912_high_31
NF14912_high_31
[»] chr5 (17 HSPs)
chr5 (70-223)||(7739158-7739308)
chr5 (1-60)||(3851358-3851416)
chr5 (1-64)||(5259472-5259534)
chr5 (1-53)||(35969216-35969267)
chr5 (1-60)||(3851450-3851508)
chr5 (1-68)||(11795723-11795789)
chr5 (1-60)||(13311261-13311319)
chr5 (1-60)||(19531388-19531446)
chr5 (1-60)||(23914836-23914894)
chr5 (1-60)||(26300106-26300164)
chr5 (1-60)||(26300198-26300256)
chr5 (1-60)||(41180300-41180358)
chr5 (1-60)||(43446854-43446912)
chr5 (1-63)||(38835612-38835674)
chr5 (1-61)||(13311169-13311227)
chr5 (1-61)||(37944596-37944655)
chr5 (1-57)||(42013820-42013875)
[»] chr3 (14 HSPs)
chr3 (1-65)||(52931760-52931823)
chr3 (1-61)||(52168277-52168336)
chr3 (18-61)||(19857535-19857577)
chr3 (18-60)||(12047240-12047281)
chr3 (1-53)||(22173797-22173848)
chr3 (1-61)||(29565103-29565162)
chr3 (1-60)||(38455252-38455310)
chr3 (1-60)||(51239330-51239388)
chr3 (1-61)||(21403983-21404040)
chr3 (6-60)||(54690921-54690975)
chr3 (17-62)||(25881129-25881173)
chr3 (1-62)||(36362597-36362657)
chr3 (1-57)||(29720163-29720218)
chr3 (8-60)||(41254025-41254076)
[»] chr1 (21 HSPs)
chr1 (1-60)||(31008254-31008312)
chr1 (1-61)||(4060258-4060317)
chr1 (17-61)||(47023184-47023227)
chr1 (17-60)||(31130916-31130959)
chr1 (17-63)||(23575309-23575355)
chr1 (1-61)||(639793-639852)
chr1 (1-57)||(17490486-17490541)
chr1 (1-60)||(2352982-2353040)
chr1 (1-60)||(6065456-6065514)
chr1 (1-60)||(8258030-8258088)
chr1 (1-60)||(8338762-8338820)
chr1 (1-60)||(28725553-28725611)
chr1 (17-60)||(31130797-31130840)
chr1 (1-60)||(33604078-33604136)
chr1 (1-60)||(37734860-37734918)
chr1 (1-60)||(46412775-46412833)
chr1 (1-60)||(48022590-48022648)
chr1 (1-63)||(3384215-3384276)
chr1 (10-60)||(35366966-35367015)
chr1 (1-65)||(1035974-1036037)
chr1 (17-61)||(23575421-23575464)
[»] chr8 (10 HSPs)
chr8 (1-61)||(2116099-2116159)
chr8 (1-61)||(9056108-9056167)
chr8 (1-60)||(40098755-40098813)
chr8 (1-62)||(1739652-1739712)
chr8 (1-60)||(14381233-14381291)
chr8 (1-60)||(31810421-31810479)
chr8 (1-60)||(40098847-40098905)
chr8 (1-58)||(33574874-33574930)
chr8 (1-61)||(10934597-10934656)
chr8 (1-33)||(25267996-25268028)
[»] chr6 (10 HSPs)
chr6 (1-65)||(6560744-6560807)
chr6 (1-60)||(17773588-17773646)
chr6 (17-61)||(8145942-8145986)
chr6 (1-64)||(2988790-2988852)
chr6 (1-60)||(8146036-8146094)
chr6 (1-60)||(21506458-21506516)
chr6 (1-60)||(30397720-30397778)
chr6 (1-60)||(31536306-31536364)
chr6 (10-60)||(26527185-26527234)
chr6 (1-61)||(28555034-28555093)
[»] chr4 (12 HSPs)
chr4 (1-65)||(5281222-5281285)
chr4 (1-61)||(5418602-5418661)
chr4 (1-63)||(51232263-51232324)
chr4 (1-62)||(55087798-55087858)
chr4 (1-61)||(56328537-56328596)
chr4 (1-60)||(14450952-14451010)
chr4 (17-60)||(21884013-21884056)
chr4 (1-60)||(52817654-52817712)
chr4 (17-60)||(56328444-56328487)
chr4 (15-60)||(16468305-16468349)
chr4 (1-61)||(2440904-2440963)
chr4 (1-61)||(3511703-3511762)
[»] chr7 (10 HSPs)
chr7 (1-60)||(34275278-34275337)
chr7 (1-60)||(38238871-38238929)
chr7 (1-62)||(1706826-1706886)
chr7 (17-60)||(6455652-6455694)
chr7 (1-60)||(25079202-25079260)
chr7 (1-60)||(34703530-34703588)
chr7 (1-60)||(38238778-38238837)
chr7 (29-61)||(10415053-10415085)
chr7 (29-61)||(28306429-28306461)
chr7 (1-57)||(29498781-29498836)
[»] chr2 (9 HSPs)
chr2 (1-60)||(5574197-5574255)
chr2 (17-61)||(9431191-9431234)
chr2 (17-60)||(2060199-2060242)
chr2 (1-60)||(3887828-3887886)
chr2 (1-60)||(38594431-38594489)
chr2 (1-60)||(38598027-38598085)
chr2 (1-53)||(11342057-11342108)
chr2 (1-61)||(14308733-14308792)
chr2 (30-58)||(37195167-37195195)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-54)||(17253-17306)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-60)||(61249-61307)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-60)||(54383-54441)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-60)||(120232-120290)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 7739308 - 7739158
Alignment:
Q  70 tctatagggataatggttcaacttaaatgcatttagttttcttaatttatgttacaacatttcttgaattgggaaatgatatgtatcccgagaggnnnnn 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  7739308 tctatagggataatggttaaacttaaatgcatttagttttcttaatttatgttacaacatttcttgaattgggaaatgatatgtatcccgagagg---tt 7739212  T
Q  170 nnatgccgacaaattcacgaccatattaaatttgcattccttcaattcctttcc 223  Q
      |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7739211 ttatgccgacaaattcacgaccatattaaatttgcattccatcaattcctttcc 7739158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3851416 - 3851358
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  |||||||||||||||||||||||||    
T  3851416 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgatcggagggtgta 3851358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5259472 - 5259534
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtacttt 64  Q
    |||||| | |||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  5259472 cattaaatgaatgaatctaaaatgtag-ttttttgcttatattagtgaccggagggtgtacttt 5259534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35969216 - 35969267
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcgga 53  Q
    |||||||| ||||||||||||| || || ||||||||||||||||||||||||    
T  35969216 cattaattgaatgtatctaaaaagt-gaatttttacttatattagtgatcgga 35969267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3851450 - 3851508
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||||||||||||||  | || ||||| ||||||||||||| |||||||||||    
T  3851450 cattaattaaatgtatctaaaaaat-gaatttttgcttatattagtgaccggagggtgta 3851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11795789 - 11795723
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtactttaata 68  Q
    |||||||| |||| ||||||||||| |||||||  ||||||||||||| |||||||| || |||||||    
T  11795789 cattaattgaatgaatctaaaatgttgatttttg-cttatattagtgaccggagggtatattttaata 11795723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13311261 - 13311319
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||||||||||||  |||||||| ||||||||||||||| || ||||||||    
T  13311261 cattaattgaatgtatctaaaagatagatttt-tacttatattagtgaccgaagggtgta 13311319  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19531388 - 19531446
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || || ||||| |||||||||||||||||||| ||||    
T  19531388 cattaattgaatgtatctaaaaagt-gaatttttgcttatattagtgatcggaggatgta 19531446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23914894 - 23914836
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  23914894 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 23914836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26300164 - 26300106
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||| ||||||  ||||||||||||| |||||||||||    
T  26300164 cattaattgaatgtatctaaaaagtaaatttttg-cttatattagtgaccggagggtgta 26300106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26300198 - 26300256
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||| | |||| |||||||||||||| |||||||||||    
T  26300198 cattaattgaatgtatctaaaaagtaaaatttt-acttatattagtgaccggagggtgta 26300256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41180300 - 41180358
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| |||||| | ||||||||||| |||||| ||||||||||||| |||||||||||    
T  41180300 cattaaataaatgaacctaaaatgtag-ttttttgcttatattagtgaccggagggtgta 41180358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43446912 - 43446854
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||||||||||||||||| ||| | ||||| ||||||||||| | |||||||||||    
T  43446912 cattaattaaatgtatctaaaaagta-aatttttgcttatattagtaaccggagggtgta 43446854  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38835612 - 38835674
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtactt 63  Q
    |||||||| ||||||| ||||| ||  ||||||| ||||||||||||| | ||||||||||||    
T  38835612 cattaattgaatgtatttaaaaagtgaattttttgcttatattagtgaccagagggtgtactt 38835674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13311227 - 13311169
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||| ||||||||||||| ||||| ||||  ||||||||||||| ||||||||||||    
T  13311227 cattaattgaatgtatctaaaa-gtagacttttg-cttatattagtgaccggagggtgtac 13311169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37944655 - 37944596
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||| |||||| |||||    
T  37944655 cattaattgaatgtatctaaaaagt-gaatttttgcttatattagtgaccggaggatgtac 37944596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42013875 - 42013820
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggt 57  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||| ||||||||    
T  42013875 cattaattgaatgtatctaaaaagt-gaatttttgcttatattagtgaccggagggt 42013820  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 52931760 - 52931823
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtacttta 65  Q
    |||||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||    
T  52931760 cattaattgaatgtatctaaaaagtagatttt-tacttatatcagtgaccggagggtgtacttta 52931823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 52168336 - 52168277
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||||||||||||||||| ||| | ||||| ||||||||||||| ||||||||||||    
T  52168336 cattaattaaatgtatctaaaaagta-aatttttgcttatattagtgaccggagggtgtac 52168277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 19857577 - 19857535
Alignment:
Q  18 taaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  19857577 taaaatgta-attttttacttatattagtgatcggagggtgtac 19857535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 12047281 - 12047240
Alignment:
Q  18 taaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  12047281 taaaatgta-attttttacttatattagtgatcggagggtgta 12047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22173848 - 22173797
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcgga 53  Q
    |||||||| |||||||||||||||||||| |||| ||||||||| ||||||||    
T  22173848 cattaattgaatgtatctaaaatgtagat-ttttgcttatattaatgatcgga 22173797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29565162 - 29565103
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    ||||||||||||||||||||||  | |||||||  ||||||||||||| ||||||||||||    
T  29565162 cattaattaaatgtatctaaaaaattgatttttg-cttatattagtgaccggagggtgtac 29565103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38455252 - 38455310
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||||||||||||||||| ||| | |||||  |||||||||||| |||||||||||    
T  38455252 cattaattaaatgtatctaaaaagta-aatttttgtttatattagtgaccggagggtgta 38455310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 51239330 - 51239388
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||||||||||||  |||||||||  ||||||||||||| |||||||||||    
T  51239330 cattaattgaatgtatctaaaaaatagatttttg-cttatattagtgaccggagggtgta 51239388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21403983 - 21404040
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||| ||||||||||||||| |   ||||| ||||||||||||| ||||||||||||    
T  21403983 cattaattgaatgtatctaaaatgga---tttttgcttatattagtgaccggagggtgtac 21404040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 54690921 - 54690975
Alignment:
Q  6 attaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||| |||||||| |||||| |||||| |||||| |||||||||||    
T  54690921 attaaatgaatcttaaatgtagtttttttgcttataatagtgaccggagggtgta 54690975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 25881173 - 25881129
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgtact 62  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||    
T  25881173 ctaaaatgtag-ttttttgcttatattagtgaccggagggtgtact 25881129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36362657 - 36362597
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtact 62  Q
    |||||||||||||||| ||||  || |||||||  ||||||||||||| |||||||||||||    
T  36362657 cattaattaaatgtatttaaagagttgatttttg-cttatattagtgaccggagggtgtact 36362597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29720163 - 29720218
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggt 57  Q
    |||||||||||||||| ||||| || || ||||| ||||||||||||| ||||||||    
T  29720163 cattaattaaatgtatttaaaaagt-gaatttttgcttatattagtgaccggagggt 29720218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 41254025 - 41254076
Alignment:
Q  8 taaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||||||||||||| || ||||| |||||| || |||||||||||||||    
T  41254025 taaatgtatctaaaatgttga-tttttgcttataataatgatcggagggtgta 41254076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31008312 - 31008254
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||    
T  31008312 cattaattaaatgtatctaaaaagtaga-tttttgcttatattagtgaccggagggtgta 31008254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4060258 - 4060317
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    ||||| |||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  4060258 cattagttaaatgtatctaaaaagtaga-tttttgcttatattagtgaccggagggtgtac 4060317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 47023227 - 47023184
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  47023227 ctaaaatgtag-ttttttacttatattagtgatcggagggtgtac 47023184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 31130916 - 31130959
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  31130916 ctaaaatgtagtttttttgcttatattagtgatcggagggtgta 31130959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 23575355 - 23575309
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgtactt 63  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  23575355 ctaaaatgtagtttttttgcttatattagtgaccggagggtgtactt 23575309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 639852 - 639793
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| ||||||||||||    
T  639852 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgtac 639793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17490541 - 17490486
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggt 57  Q
    |||||||||||||||||||||| || || ||||| ||||||||||||| ||||||||    
T  17490541 cattaattaaatgtatctaaaaagtgga-tttttgcttatattagtgaccggagggt 17490486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2352982 - 2353040
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||||||||||||||  || ||||||  |||||||||||||||||| ||||||    
T  2352982 cattaattaaatgtatctaaaaaataaatttttg-cttatattagtgatcggaaggtgta 2353040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6065514 - 6065456
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||||| ||||  ||||||||||||| |||||||||||    
T  6065514 cattaattgaatgtatctaaaaagtagaattttg-cttatattagtgaccggagggtgta 6065456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8258030 - 8258088
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||| |||||||||||    
T  8258030 cattaattgaatgtatctaaaaagt-gaatttttgcttatattagtgaccggagggtgta 8258088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8338762 - 8338820
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| |||||| | |||||||||| || |||||||||||||| |||||||||||||||    
T  8338762 cattaaataaatgaacctaaaatgta-atcttttacttatattaatgatcggagggtgta 8338820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28725553 - 28725611
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| |||||| | ||||||||||| |||||| ||||||||||||| |||||||||||    
T  28725553 cattaaataaatgaacctaaaatgtag-ttttttgcttatattagtgaccggagggtgta 28725611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 31130797 - 31130840
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||    
T  31130797 ctaaaatgtagtttttttgcttatattagtaatcggagggtgta 31130840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33604078 - 33604136
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  33604078 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 33604136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37734860 - 37734918
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  37734860 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 37734918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46412775 - 46412833
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||| ||| |||||||| ||||| |||||||| ||||||||||||||||||    
T  46412775 cattaattgaatgaatccaaaatgtaaatttt-tacttataatagtgatcggagggtgta 46412833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48022648 - 48022590
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  48022648 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 48022590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3384276 - 3384215
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtactt 63  Q
    |||||||| ||||||||||||| || || ||||| ||||||||| ||| ||||||||||||||    
T  3384276 cattaattgaatgtatctaaaaagt-gaatttttgcttatattaatgaccggagggtgtactt 3384215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 35367015 - 35366966
Alignment:
Q  10 aatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||||||||  ||||||||| | ||||||||||||||||||||||||    
T  35367015 aatgtatctaaaaattagattttt-atttatattagtgatcggagggtgta 35366966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1035974 - 1036037
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtacttta 65  Q
    |||||||| |||| ||||| || || || ||||| ||||||||||||| ||||||||||||||||    
T  1035974 cattaattgaatgaatctagaaagt-gaatttttgcttatattagtgaccggagggtgtacttta 1036037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 23575421 - 23575464
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||    
T  23575421 ctaaaatgta-attttttacttatattagtgaccggaggatgtac 23575464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2116159 - 2116099
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||| | |||| ||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  2116159 cattaaatgaatgaatctaaaatatagtttttttacttatattagtgaccggagggtgtac 2116099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9056108 - 9056167
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||||||||||||||||| || || ||||| ||||||||||||| ||||||||||||    
T  9056108 cattaattaaatgtatctaaaaagt-gaatttttgcttatattagtgaccggagggtgtac 9056167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40098813 - 40098755
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||||||    
T  40098813 cattaattgaatgtatctaaaaagtaga-tttttgcttatattagtgaccggagggtgta 40098755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1739652 - 1739712
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtact 62  Q
    |||||||| ||||||||||||| ||| ||||||  ||||||||||||| |||||||||||||    
T  1739652 cattaattgaatgtatctaaaaagtaaatttttg-cttatattagtgaccggagggtgtact 1739712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14381291 - 14381233
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  14381291 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 14381233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31810421 - 31810479
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| | |||| ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  31810421 cattaaatgaatgaatctaaaatgtag-ttttttgcttatattagtgaccggagggtgta 31810479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 40098847 - 40098905
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  40098847 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 40098905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33574874 - 33574930
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtg 58  Q
    |||||||| |||||||||||||||| || |||||  |||||||||||| |||||||||    
T  33574874 cattaattgaatgtatctaaaatgtgga-tttttgtttatattagtgaccggagggtg 33574930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10934656 - 10934597
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    ||||||||||||| || |||||| ||| |||||| |||||| |||||| ||||||||||||    
T  10934656 cattaattaaatgaatgtaaaatatag-ttttttgcttataatagtgaccggagggtgtac 10934597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25268028 - 25267996
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttt 33  Q
    ||||||||||||| |||||||||||||||||||    
T  25268028 cattaattaaatgaatctaaaatgtagattttt 25267996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6560744 - 6560807
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtacttta 65  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  6560744 cattaaatgaatgaatctaaaatgta-attttttgcttatattagtgaccggagggtgtacttta 6560807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17773588 - 17773646
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||||||    
T  17773588 cattaattgaatgtatctaaaaagtaga-tttttgcttatattagtgaccggagggtgta 17773646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 8145986 - 8145942
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  8145986 ctaaaatgtagtttttttgcttatattagtgaccggagggtgtac 8145942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2988852 - 2988790
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtacttt 64  Q
    |||||| |||||| | |||||||||| ||||||| ||||||||| ||| |||||||||||||||    
T  2988852 cattaaataaatgaacctaaaatgta-attttttgcttatattaatgaccggagggtgtacttt 2988790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8146036 - 8146094
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| |||||||||||    
T  8146036 cattaaatgaatgaatctaaaatgta-attttttgcttatattagtgaccggagggtgta 8146094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21506516 - 21506458
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  21506516 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 21506458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30397778 - 30397720
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||||||||||||||| || |||||  |||||||||||| |||||||||||    
T  30397778 cattaattgaatgtatctaaaatgtgga-tttttgtttatattagtgaccggagggtgta 30397720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31536364 - 31536306
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| ||||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  31536364 cattaaataaatgtatctaaaaagttgatttttg-cttatattagtgaccggagggtgta 31536306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 26527234 - 26527185
Alignment:
Q  10 aatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||||||||||| |||||||  |||||| ||||||||||||||||||    
T  26527234 aatgtatctaaaatgttgatttttg-cttataatagtgatcggagggtgta 26527185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28555034 - 28555093
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||| |||||| |||||||||||||| ||||| |||||| |||||| | ||||||||||    
T  28555034 cattaaataaatgaatctaaaatgtaga-tttttgcttataatagtgaccagagggtgtac 28555093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5281222 - 5281285
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtacttta 65  Q
    |||||||| ||||||||||||| || || ||||||||||||||||||| ||||||||||| ||||    
T  5281222 cattaattgaatgtatctaaaaagt-gaatttttacttatattagtgaccggagggtgtatttta 5281285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5418602 - 5418661
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||| ||||||||||||| ||| ||||||  ||||||||||||||||||||||||||    
T  5418602 cattaattcaatgtatctaaaaagtaaatttttg-cttatattagtgatcggagggtgtac 5418661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51232324 - 51232263
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtactt 63  Q
    |||||| |||||| | ||||||||||| |||||||||||||||||||| |||| |||||||||    
T  51232324 cattaaataaatgaacctaaaatgtag-ttttttacttatattagtgaccggaaggtgtactt 51232263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 55087798 - 55087858
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtact 62  Q
    |||||||| |||||||||||||  |||||||||  ||||||||||||| |||||||||||||    
T  55087798 cattaattgaatgtatctaaaaattagatttttg-cttatattagtgaccggagggtgtact 55087858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 56328537 - 56328596
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||| | |||| ||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  56328537 cattaaatgaatgaatctaaaatgtag-ttttttgcttatattagtgaccggagggtgtac 56328596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14451010 - 14450952
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| | |||| |||||||||||||||||||  |||||| ||||||||||||||||||    
T  14451010 cattaaatgaatgaatctaaaatgtagatttttg-cttataatagtgatcggagggtgta 14450952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 21884056 - 21884013
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  21884056 ctaaaatgtagtttttttgcttatattagtgaccggagggtgta 21884013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52817654 - 52817712
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || |||||||  ||||||||||||| |||||||||||    
T  52817654 cattaattgaatgtatctaaaaagtggatttttg-cttatattagtgaccggagggtgta 52817712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 56328487 - 56328444
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  56328487 ctaaaatgtagtttttttgcttatattagtgaccggagggtgta 56328444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 16468305 - 16468349
Alignment:
Q  15 atctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||    
T  16468305 atctaaaatgtagatttttta-ttataatagtgaccggagggtgta 16468349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2440963 - 2440904
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||| |||||| | ||||||| || ||||||| |||||||||||||||||| |||||||    
T  2440963 cattaaataaatgaacctaaaatata-attttttgcttatattagtgatcggatggtgtac 2440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3511762 - 3511703
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||| |||| |||||||||||| | ||||  |||||||||||||||||| |||||||    
T  3511762 cattaattgaatgaatctaaaatgtaaagttttg-cttatattagtgatcggaaggtgtac 3511703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34275278 - 34275337
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||| | |||| ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  34275278 cattaaatgaatgaatctaaaatgtagtttttttgcttatattagtgaccggagggtgta 34275337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38238871 - 38238929
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||||||    
T  38238871 cattaattgaatgtatctaaaaagtaga-tttttgcttatattagtgaccggagggtgta 38238929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1706886 - 1706826
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtact 62  Q
    |||||||| |||||||||||||  || |||||| |||||||||||||| |||||||||||||    
T  1706886 cattaattgaatgtatctaaaaaataaattttt-acttatattagtgaccggagggtgtact 1706826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 6455652 - 6455694
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||||||||||||  |||||||||||||||||||||||||    
T  6455652 ctaaaatgtagatttttg-cttatattagtgatcggagggtgta 6455694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25079260 - 25079202
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||| ||||    
T  25079260 cattaattgaatgtatctaaaaagtaga-tttttgcttatattagtgaccggaggatgta 25079202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34703530 - 34703588
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||| |||||||||||    
T  34703530 cattaattgaatgtatctaaaaagt-gaatttttgcttatattagtgaccggagggtgta 34703588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 38238837 - 38238778
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||  | ||||| ||||||||||||| |||||||||||    
T  38238837 cattaattgaatgtatctaaaaagtgaaatttttgcttatattagtgaccggagggtgta 38238778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 10415053 - 10415085
Alignment:
Q  29 ttttttacttatattagtgatcggagggtgtac 61  Q
    |||||| ||||||||||||||||||||||||||    
T  10415053 ttttttgcttatattagtgatcggagggtgtac 10415085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 28306429 - 28306461
Alignment:
Q  29 ttttttacttatattagtgatcggagggtgtac 61  Q
    |||||||||||||||||||||| ||||||||||    
T  28306429 ttttttacttatattagtgatcagagggtgtac 28306461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29498836 - 29498781
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggt 57  Q
    |||||||| ||| |||||||||||| || ||||| ||||||||| ||||||||||||    
T  29498836 cattaattgaatatatctaaaatgtgga-tttttgcttatattattgatcggagggt 29498781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5574197 - 5574255
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||| |||||||||||    
T  5574197 cattaattgaatgtatctaaaaagtaga-tttttgcttatattagtgaccggagggtgta 5574255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 9431234 - 9431191
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    
T  9431234 ctaaaatgta-attttttacttatattagtgaccggagggtgtac 9431191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 2060242 - 2060199
Alignment:
Q  17 ctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  2060242 ctaaaatgtagtttttttgcttatattagtgaccggagggtgta 2060199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3887886 - 3887828
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||||||||||||  |||||||||  ||||||||||||||| |||||||||    
T  3887886 cattaattgaatgtatctaaaaaatagatttttg-cttatattagtgatcagagggtgta 3887828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38594431 - 38594489
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||||||||||||  |||||||||  ||||||||||||| |||||||||||    
T  38594431 cattaattgaatgtatctaaaaaatagatttttg-cttatattagtgaccggagggtgta 38594489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38598027 - 38598085
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||||||||||||  |||||||||  ||||||||||||| |||||||||||    
T  38598027 cattaattgaatgtatctaaaaaatagatttttg-cttatattagtgaccggagggtgta 38598085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11342057 - 11342108
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcgga 53  Q
    ||||||||||||| ||||||||| |||| ||||| |||||| |||||||||||    
T  11342057 cattaattaaatgaatctaaaatataga-tttttgcttataatagtgatcgga 11342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14308733 - 14308792
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgtac 61  Q
    |||| ||| |||| ||||||||| | |||||||| |||||||| |||||||||||||||||    
T  14308733 catttattgaatgaatctaaaatat-gattttttgcttatatttgtgatcggagggtgtac 14308792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 37195167 - 37195195
Alignment:
Q  30 tttttacttatattagtgatcggagggtg 58  Q
    |||||||||||||||||||||||||||||    
T  37195167 tttttacttatattagtgatcggagggtg 37195195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17253 - 17306
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggag 54  Q
    |||||||||||||||| ||||| ||  ||||||| |||||||||||||||||||    
T  17253 cattaattaaatgtatttaaaaagtgaatttttttcttatattagtgatcggag 17306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 61249 - 61307
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| |||||||||||||||| || |||||  |||||||||||| |||||||||||    
T  61249 cattaattgaatgtatctaaaatgtgga-tttttgtttatattagtgaccggagggtgta 61307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 54441 - 54383
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||| | |||||||||||    
T  54441 cattaattgaatgtatctaaaaagtaga-tttttgcttatattagtaaccggagggtgta 54383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 120232 - 120290
Alignment:
Q  1 cattaattaaatgtatctaaaatgtagattttttacttatattagtgatcggagggtgta 60  Q
    |||||||| ||||||||||||| ||| ||||||  ||||||||||||| |||||||||||    
T  120232 cattaattgaatgtatctaaaaagtaaatttttg-cttatattagtgaccggagggtgta 120290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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