View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_high_35 (Length: 237)
Name: NF14912_high_35
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_35 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 17607 - 17430
Alignment:
| Q |
1 |
ctttcacactaatgaaaaaatacaatctagtgtattacgttctcacactccaatcggattgtgcaataatctaaccttgaaaaatgaataggatttcaat |
100 |
Q |
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| T |
17607 |
cttttacactaatgaaaaaatacaatctagtctattacgttctcacactccaatcggattgtgcaataatctaaccttg-aaaatgaataggatttcaat |
17509 |
T |
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| Q |
101 |
ttgaaccctccaaaaacccaacaaaatgaatcctcctggaaatggcctaagagaagttcctataaggccataacgccgcaaatctagt |
188 |
Q |
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| T |
17508 |
ttgaacactccaaaaacccaagaaaatgaatcctcctgaaaatggcctaagaga---------aaggccataacgccgcaaatctagt |
17430 |
T |
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