View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_high_4 (Length: 558)
Name: NF14912_high_4
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Complemental strand, 29209070 - 29208543
Alignment:
| Q |
15 |
cagagacaacaaacattaattctaaaacaaaacttaatagagcatagaaaattattgaattccaatcaactataacatacacggatacacctcagtgttc |
114 |
Q |
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| T |
29209070 |
cagagacaacaaacattaattctaaaacaaaacttaatagagcatagaaaattattgaattccaatcaactataacatacacggatacacctcagtgttc |
29208971 |
T |
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| Q |
115 |
tccaaagaatcaaatacaacatgcaaataaacattggattaattaatgtgaaccatggattatccctcacttaagctaagtggaaatttgaaggaacata |
214 |
Q |
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| T |
29208970 |
tccaaagaatcaaatacaacatgcaaataaacattggattaattaatgtgaaccatggattatccctcacttaagctaagtggaaatttgaaggaacata |
29208871 |
T |
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| Q |
215 |
ataaggattgacaaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgatgtagcaacag |
314 |
Q |
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| T |
29208870 |
ataaggattgacaaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgatgtagcaacag |
29208771 |
T |
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| Q |
315 |
aaattaaattaaatttttcagacagttaccaacctccaaacttcatcttttctcactctttatatagccccctcaattcaacaacggttacatagttaca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208770 |
aaattaaattaaatttttcagacagttaccaacctccaaacttcatcttttctcactctttatatagccccctcaattcaacaacggttacatagttaca |
29208671 |
T |
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| Q |
415 |
catttattccacttaaacatggagagagcaaacactaaatctactttgaaggttggactagtgattaattttttataatgtagttttgttctacttcctc |
514 |
Q |
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| T |
29208670 |
catttattccacttaaacatggagagagcaaacactaaatctactttgaaggttggactagtgattaattttttataatgtagttttgttctacttcctc |
29208571 |
T |
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| Q |
515 |
ttagttaattaatactatgtcctaattg |
542 |
Q |
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| T |
29208570 |
ttagttaattaatactatgtcctaattg |
29208543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 205 - 471
Target Start/End: Original strand, 38377513 - 38377782
Alignment:
| Q |
205 |
aaggaacataataaggattgacaaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgat |
304 |
Q |
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| T |
38377513 |
aaggaacataata-ggattgataaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgt---tgat |
38377608 |
T |
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| Q |
305 |
gtagcaacagaaattaa--attaaatttttcagacagttaccaacctccaaacttcatcttttctcactc--tttatatagccccctcaattcaacaacg |
400 |
Q |
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| T |
38377609 |
gtagcaacagaaattaaatattgaacctttcagacagttaccaacctccaaacttcatattttctcactctatatatatagtcccct-tgttcaataacg |
38377707 |
T |
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| Q |
401 |
----gttacatagttacacatttattccacttaaacatggagagagcaaacactaaatctactttgaaggttgga |
471 |
Q |
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| | ||||||||||||| | |||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
38377708 |
actagctgcatagttacacatcaagtccacttaaacatggagagaccaaacactgaatctgttttgaaggttgga |
38377782 |
T |
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