View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14912_high_43 (Length: 201)
Name: NF14912_high_43
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 20401104 - 20400939
Alignment:
| Q |
20 |
gtataaattgaagtcatcgggacctgggctcttgtctccattacaactccataccgtttctttgatctccttctcatcaaactactatcaacaacttaga |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20401104 |
gtataaattgaagtcatcgggaactgggctcttgtctccattacaactccataccgtttctttgatctccttctcatcaaactactatctacaacgtaga |
20401005 |
T |
|
| Q |
120 |
ttctgacaagcatagttgttgaaatgtaactccctccaatcttggcctagattcatctgtatctgtg |
186 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20401004 |
-tctgacaagcatagttgttgaaatgtaagtccctccaatcttggcctagattcatctgtatctgtg |
20400939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University