View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14912_high_5 (Length: 547)
Name: NF14912_high_5
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 12425583 - 12425055
Alignment:
| Q |
1 |
agagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12425583 |
agagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaa |
12425484 |
T |
|
| Q |
101 |
cttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12425483 |
cttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggat |
12425384 |
T |
|
| Q |
201 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12425383 |
atgaaatacctttaaaaactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
12425284 |
T |
|
| Q |
301 |
tcatgatagtaatggttttgatttcaataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgttt |
400 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12425283 |
tcatgatagtactggttttgattttaataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgttt |
12425184 |
T |
|
| Q |
401 |
ggcttggcaaatattgagcttcctctggctgcattactttaccacttcgactggaaaattcctaatgaaatgaaagaagaggacttagatatgactgaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12425183 |
ggcttggcaaatattgagcttcctctggctgcattactttaccacttcgactggaaaattcctaatgaaatgaaagaagaggacttagatatgactgaag |
12425084 |
T |
|
| Q |
501 |
tctttggagctacggtgtctaggaaaaac |
529 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12425083 |
tctttggagctacggtgtctaggaaaaac |
12425055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 12268102 - 12268630
Alignment:
| Q |
1 |
agagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| |||||||||||||||||||||| | |||||||||||||||||| ||||| |||||| | ||| || |
|
|
| T |
12268102 |
agagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatttatgaaagtgatttgcatgaa |
12268201 |
T |
|
| Q |
101 |
cttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggat |
200 |
Q |
| |
|
||| | |||||||||| ||||||||||||||||||||||||||||||||||| | || | || | ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
12268202 |
cttagttacttgaagtcagtgatcaaagaaaccctgaggttacacccacctggtgcaatacttacaagagaatgcagggaagcatgcaacataggaggat |
12268301 |
T |
|
| Q |
201 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
300 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
12268302 |
atgaaatacctataaagactaatttaatattaaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtt |
12268401 |
T |
|
| Q |
301 |
tcatgatagtaatggttttgatttcaataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttgttt |
400 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12268402 |
tcatgataatactggttttgattttaataaagtgaatgataatagctttcagtacatcccttttggaggaggaagaagaatgtgtccaggagttttgttt |
12268501 |
T |
|
| Q |
401 |
ggcttggcaaatattgagcttcctctggctgcattactttaccacttcgactggaaaattcctaatgaaatgaaagaagaggacttagatatgactgaag |
500 |
Q |
| |
|
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
12268502 |
ggtttagcaaatattgagcttcctctggctgccttactttaccacttcgactggaaaattcctaatgaaatgaaagcagaagactttgatatgactgaag |
12268601 |
T |
|
| Q |
501 |
tctttggagctacggtgtctaggaaaaac |
529 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
12268602 |
aatatggagctacggtgtctaggaaaaac |
12268630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 55955256 - 55954743
Alignment:
| Q |
1 |
agagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaa |
100 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| || |
|
|
| T |
55955256 |
agagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaa |
55955157 |
T |
|
| Q |
101 |
cttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggat |
200 |
Q |
| |
|
||| | |||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
55955156 |
cttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcttgcaacatagatggat |
55955057 |
T |
|
| Q |
201 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
300 |
Q |
| |
|
|||||||||| ||||||||| | | ||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||||| |
|
|
| T |
55955056 |
atgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggtt |
55954957 |
T |
|
| Q |
301 |
tcatgatagtaatggttttgatttcaataaagtg---aatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaattttg |
397 |
Q |
| |
|
| ||||||||| |||||||||||| |||||| || ||| ||||||||||| | || | |||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
55954956 |
taatgatagtactggttttgattttaataaattgaacaataataatagctttgattacatgccttttgggggaggaagaagaatgtgtccgggaatttcg |
55954857 |
T |
|
| Q |
398 |
tttggcttggcaaatattgagcttcctctggctgcattactttaccacttcgactggaaaattcctaatgaaatgaaagaagaggacttagatatgactg |
497 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| | || |||||| | ||| || ||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
55954856 |
cttggcttagctaatattgagcttcctctggctgcattgttgtatcacttcaattgggaacttcctaatggaatgaaaccagaggacttggatatgactg |
55954757 |
T |
|
| Q |
498 |
aagtctttggagct |
511 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
55954756 |
aagcctttggagct |
55954743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 55958812 - 55958296
Alignment:
| Q |
1 |
agagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||| |||||||||||||||||| || |
|
|
| T |
55958812 |
agagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaacatatgagagtgatctacaagaa |
55958713 |
T |
|
| Q |
101 |
cttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggat |
200 |
Q |
| |
|
||| | |||||||| | ||||||||||||||| |||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
55958712 |
cttagttacttgaattcagtgatcaaagaaactatgaggttacatccacctgctactttgcttataagagaatgcagggaagcatgcaacataggtggat |
55958613 |
T |
|
| Q |
201 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
300 |
Q |
| |
|
|||||||||| |||||||||| | || ||||||| |||||||| ||||||||||| || |||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
55958612 |
atgaaataccaataaagactaatgtgttagtaaatgcttgggcaatgtgaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtt |
55958513 |
T |
|
| Q |
301 |
tcatgatagtaatggttttgatttcaataaagtg------aatgataatagctttcagtatttcccttttggaggaggaagaagaatgtgtccaggaatt |
394 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||| ||| |||||| |||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55958512 |
tcatgacagtaaatattttgattttaataaagtgaatagtaataataataactttgaatacatcccttttggaggaggaagaagaatgtgtccaggaatt |
55958413 |
T |
|
| Q |
395 |
ttgtttggcttggcaaatattgagcttcctctggctgcattactttaccacttcgactggaaaattcctaatgaaatgaaagaagaggacttagatatga |
494 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||| | || |||||| | ||| || ||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
55958412 |
ttgtttggcttagctaatattgagcttcctcttgctgcattattgtatcacttcaattgggaacttcctaatggaatgaaaccagaggacttggatatga |
55958313 |
T |
|
| Q |
495 |
ctgaagtctttggagct |
511 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
55958312 |
ctgaagcctttggagct |
55958296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 71 - 499
Target Start/End: Complemental strand, 41795954 - 41795521
Alignment:
| Q |
71 |
aagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgag--gttacacccacctgctacattgctcatgag |
168 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||| |||| |||||| |||||| ||| ||||| || |
|
|
| T |
41795954 |
aagagaatatatgagagtgatctacatgaacttggttacttaaagtcagtgatcaaagaaacaatgagaggttacatccaccttttactttgcttccaag |
41795855 |
T |
|
| Q |
169 |
agaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattgg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||| |||||||||||| || |||| |
|
|
| T |
41795854 |
agaatgcagggaagcgtgcaacataggtggatatgaaatacctataaagactagtgtgatagtaaatgcatgggcaatcggaagagatcccaaatattga |
41795755 |
T |
|
| Q |
269 |
tctgatgctgagaagtttataccggagaggtttcatgatagtaatggttttgatttcaataaagtgaa---tgataatagctttcagtatttcccttttg |
365 |
Q |
| |
|
| |||||| || || ||||||| |||||||||| || ||||| | |||||| || ||||||||||| | |||||| |||| | || |||||| | |
|
|
| T |
41795754 |
tatgatgcagataattttatacataagaggtttcaggacagtaaagattttgaatttaataaagtgaatagtaataataactttgaatacatcccttcta |
41795655 |
T |
|
| Q |
366 |
gaggaggaagaagaatgtgtccaggaattttgtttggcttggcaaatattgagcttcctctggctgcattactttaccacttcgactggaaaattcctaa |
465 |
Q |
| |
|
| | |||||||||||||||||| ||||||| | ||||||| || || |||||||||||||| |||||||| | | |||||| | ||| || ||||||| |
|
|
| T |
41795654 |
gggaaggaagaagaatgtgtccgggaatttcgcttggcttagctaacattgagcttcctctagctgcattgttgcatcacttcaattgggaacttcctaa |
41795555 |
T |
|
| Q |
466 |
tgaaatgaaagaagaggacttagatatgactgaa |
499 |
Q |
| |
|
|| ||||||| ||| |||||||||| ||||||| |
|
|
| T |
41795554 |
tggaatgaaaccagacgacttagataagactgaa |
41795521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 7141405 - 7141548
Alignment:
| Q |
8 |
atgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggt |
107 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||| ||||| |||| | || |||||| | ||||||||| | |||| || | ||||| | | |
|
|
| T |
7141405 |
atgaaaaatccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagtt |
7141504 |
T |
|
| Q |
108 |
acttgaagttagtgatcaaagaaaccctgaggttacacccacct |
151 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7141505 |
acttaaagttagtgatcaaagaaacattgaggttacacccacct |
7141548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 7131681 - 7131730
Alignment:
| Q |
8 |
atgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagc |
57 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
7131681 |
atgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagc |
7131730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 7154202 - 7154318
Alignment:
| Q |
35 |
gcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccc |
134 |
Q |
| |
|
|||||||||||| |||||||||| | ||||| ||||| | ||||| ||| ||||||| || |||| ||||| |||||||||||||||||||| |
|
|
| T |
7154202 |
gcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaa |
7154301 |
T |
|
| Q |
135 |
tgaggttacacccacct |
151 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7154302 |
tgaggttacacccacct |
7154318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 7141631 - 7141710
Alignment:
| Q |
231 |
taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagt |
310 |
Q |
| |
|
||||||| |||||||| ||||||||||| || ||||| ||||||||||| |||||| || ||||||||| |||||||| |
|
|
| T |
7141631 |
taaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
7141710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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