View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14912_high_6 (Length: 540)

Name: NF14912_high_6
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14912_high_6
NF14912_high_6
[»] chr8 (4 HSPs)
chr8 (308-530)||(28767254-28767476)
chr8 (216-289)||(28767192-28767258)
chr8 (167-207)||(27678558-27678598)
chr8 (167-207)||(40484688-40484728)
[»] chr6 (3 HSPs)
chr6 (159-206)||(24067318-24067365)
chr6 (167-206)||(22350471-22350510)
chr6 (167-207)||(11466200-11466240)
[»] chr2 (2 HSPs)
chr2 (168-207)||(18541523-18541562)
chr2 (167-207)||(37314226-37314266)
[»] chr1 (2 HSPs)
chr1 (159-206)||(9294548-9294595)
chr1 (167-210)||(28235728-28235771)
[»] chr4 (1 HSPs)
chr4 (140-206)||(25231891-25231957)
[»] chr3 (1 HSPs)
chr3 (167-207)||(2848493-2848533)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 308 - 530
Target Start/End: Original strand, 28767254 - 28767476
Alignment:
Q  308 actactatgccacttgcactttatgttgttattattacccccataattattaatacactatagttgttgttagttgggctactacccccaattacaatcc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28767254 actactatgccacttgcactttatgttgttattattacccccataattattaatacactataattgttgttagttgggctactacccccaattacaatcc 28767353  T
Q  408 catgtcaccctatataatccaatcataagataaaatcatttgccaaattcattaactattcaactttttgaaccctatctctcttctcttcattcttcaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28767354 catgtcaccctatataatccaatcataagataaaatcatttgccaaattcattaactattcaactttttgaaccctatctctcttctcttcattcttcaa 28767453  T
Q  508 tgactgcttctgtttcacctatg 530  Q
    |||||||||||||||||||||||    
T  28767454 tgactgcttctgtttcacctatg 28767476  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 28767192 - 28767258
Alignment:
Q  216 aaaccaaaccaaccatgttattatttaatattacttacttgcacgtgacgtgtttggttgaggagttcaactac 289  Q
    |||||||||||||||||||||||||       |||||||| |||||||||||||||||| ||||||||||||||    
T  28767192 aaaccaaaccaaccatgttattatt-------acttacttacacgtgacgtgtttggttaaggagttcaactac 28767258  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 27678598 - 27678558
Alignment:
Q  167 cggttcgaccggttggtccggtccggttttcaaaactatgc 207  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  27678598 cggttcaaccggccggtccggtccggttttcaaaactatgc 27678558  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 40484728 - 40484688
Alignment:
Q  167 cggttcgaccggttggtccggtccggttttcaaaactatgc 207  Q
    ||||||||||||  |||||||||||||||| ||||||||||    
T  40484728 cggttcgaccggccggtccggtccggtttttaaaactatgc 40484688  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 24067365 - 24067318
Alignment:
Q  159 ccggttcacggttcgaccggttggtccggtccggttttcaaaactatg 206  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  24067365 ccggttcacggttcgaccggccggtccggtccgattttcaaaactatg 24067318  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 22350510 - 22350471
Alignment:
Q  167 cggttcgaccggttggtccggtccggttttcaaaactatg 206  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  22350510 cggttcgaccggccggtccggtccggttttcaaaactatg 22350471  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 11466200 - 11466240
Alignment:
Q  167 cggttcgaccggttggtccggtccggttttcaaaactatgc 207  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  11466200 cggttcaaccggccggtccggtccggttttcaaaactatgc 11466240  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 18541523 - 18541562
Alignment:
Q  168 ggttcgaccggttggtccggtccggttttcaaaactatgc 207  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  18541523 ggttcgaccggccggtccggtccggttttcaaaactatgc 18541562  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 37314266 - 37314226
Alignment:
Q  167 cggttcgaccggttggtccggtccggttttcaaaactatgc 207  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  37314266 cggttcaaccggccggtccggtccggttttcaaaactatgc 37314226  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 9294548 - 9294595
Alignment:
Q  159 ccggttcacggttcgaccggttggtccggtccggttttcaaaactatg 206  Q
    ||||||||||||  ||||||  ||||||||||||||||||||||||||    
T  9294548 ccggttcacggtcggaccggccggtccggtccggttttcaaaactatg 9294595  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 28235728 - 28235771
Alignment:
Q  167 cggttcgaccggttggtccggtccggttttcaaaactatgcatg 210  Q
    ||||||||||||  |||||||||||||||| |||||||||||||    
T  28235728 cggttcgaccggccggtccggtccggtttttaaaactatgcatg 28235771  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 25231957 - 25231891
Alignment:
Q  140 gctcgaaccgtctataccaccggttcacggttcgaccggttggtccggtccggttttcaaaactatg 206  Q
    ||||||||||  || |||||||||||||||| | |||||| ||||||  |||| |||||||||||||    
T  25231957 gctcgaaccggatacaccaccggttcacggtccaaccggtcggtccgagccgggtttcaaaactatg 25231891  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 2848533 - 2848493
Alignment:
Q  167 cggttcgaccggttggtccggtccggttttcaaaactatgc 207  Q
    ||||||||||||  |||||||||||||||| ||||||||||    
T  2848533 cggttcgaccggccggtccggtccggtttttaaaactatgc 2848493  T

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