View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_high_8 (Length: 475)
Name: NF14912_high_8
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 518387 - 517928
Alignment:
| Q |
1 |
gaattgaacactcttctccattgaaaagaacctttgaagggaacccatctccttttgctatttgcatattcggtttgaattttttggtaaaggaaataac |
100 |
Q |
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| T |
518387 |
gaattgaacactcttctccattgaaaagaacctttgaagggaacccatctccttttgctatttgcatattcggtttgaattttttggtaaaggaaataac |
518288 |
T |
|
| Q |
101 |
agattgttgttttccaggaacctttaggtatgttccattgtcttcacctatcaaataccttgttccttgtaatccttgcatgaaaatagtgttgttgatt |
200 |
Q |
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| T |
518287 |
agattgttgttttccaggaacctttaggtatgttccattgtcttcacctatcaaatagcttgttccttgtaatccttgcatgaaaatagtgttgttgaat |
518188 |
T |
|
| Q |
201 |
tttgtaagcaatgacccattgaaagaatacactttctcaaaaccaagagaaacacttttcttaaattgcattgcagtgaaccaattctcaaaagggaatg |
300 |
Q |
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| T |
518187 |
tttgtaagcaatgacccattgaaagaatacactttctcaaaaccaagagaaacacttttcttaaattgcattgcagtgaaccaattctcaaaagggaatg |
518088 |
T |
|
| Q |
301 |
gtttccaattgaacaaagtgattctagcactccatccacctttgtaatctgaaactatatgccaatttatgctaactccacaattatcaccacatggtag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
518087 |
gtttccaattgaacaaagtgattctagcactccatccacctttgtaatctgaaactatatgccaatttatgctaactccacaattatcaccacatggtaa |
517988 |
T |
|
| Q |
401 |
tttcttaggtaccctaaaatgctttaattttgcccaagcaactgtcttcaatgttctatt |
460 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
517987 |
tttcttaggtaccctaaaatgctttaatttcgcccaagcaactgtcttcaatgttctatt |
517928 |
T |
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