View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14912_low_11 (Length: 431)
Name: NF14912_low_11
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_11 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 28080547 - 28080836
Alignment:
| Q |
9 |
acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28080547 |
acatcatcattgatgacattgttatctactgcataatcagaaacatgatgcaattgtagagttggtgtcccttgataggataagtgtggatacaaattct |
28080646 |
T |
|
| Q |
109 |
tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28080647 |
tgttgccaatactcatcatattcgagtgttgagaaatatcaatgagaggatcaaccggaaaattgatagtacctgtagaatcattcatatgaagtaacga |
28080746 |
T |
|
| Q |
209 |
tcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
298 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||| |
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|
| T |
28080747 |
tcgctggtcaaaagatcggcaatgtcttgaactgttgaacaaatgattagatgatgataacgattgctgttcaaaaggttggcaatgtct |
28080836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 207 - 408
Target Start/End: Original strand, 28080934 - 28081135
Alignment:
| Q |
207 |
gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaag |
306 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |
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|
| T |
28080934 |
gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgcagttcaaaagattggcaatgtctcagtgaag |
28081033 |
T |
|
| Q |
307 |
ttcccgatgcagctactggttcaaaatgctgcttaagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcga |
406 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28081034 |
ttcccgatgcagctcctggttcaaaatgctgcttaagaaccatattagaagtattgtaagatggaaacatttctattccctggccagaatgggaagtcga |
28081133 |
T |
|
| Q |
407 |
tg |
408 |
Q |
| |
|
|| |
|
|
| T |
28081134 |
tg |
28081135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 240 - 412
Target Start/End: Complemental strand, 27930670 - 27930498
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
27930670 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctcctggttcaaaatgctgct |
27930571 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27930570 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggatgggaagtcgatgcctc |
27930498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 240 - 412
Target Start/End: Complemental strand, 27930058 - 27929886
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
27930058 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgacgttcccgatgcagctcctggttcaaaatgctgct |
27929959 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
27929958 |
taagaaccatattagatgtattgtaagatggaaacatttctattctctggccaggatgggaagtcgatgcctc |
27929886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 240 - 412
Target Start/End: Complemental strand, 27930466 - 27930294
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27930466 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctcctggttcaaaatgctgct |
27930367 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27930366 |
taagaaccatattagttgtattgtaagatggaaacatttctattccctggccagaatgggaagtcgatgcctc |
27930294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 240 - 412
Target Start/End: Complemental strand, 27930874 - 27930702
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27930874 |
ctgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctcctggttcaaaatgctgct |
27930775 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
27930774 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggatgggaagtcaatgcctc |
27930702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 240 - 412
Target Start/End: Original strand, 28081171 - 28081343
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28081171 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctcctggttcaaaatgctgct |
28081270 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28081271 |
taagaaccatattagaagtattgtaagatggaaacatttctattccctggccagaatgggaagtcgatgcctc |
28081343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 240 - 412
Target Start/End: Original strand, 28081375 - 28081547
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28081375 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctcctggttcaaaatgctgct |
28081474 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28081475 |
taagaaccatattagaagtattgtaagatggaaacatttctattccctggccagaatgggaagtcgatgcctc |
28081547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 240 - 412
Target Start/End: Original strand, 28081579 - 28081751
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28081579 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctcctggttcaaaatgctgct |
28081678 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28081679 |
taagaaccatattagaagtattgtaagatggaaacatttctattccctggccagaatgggaagtcgatgcctc |
28081751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 240 - 412
Target Start/End: Original strand, 28081783 - 28081952
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |
|
|
| T |
28081783 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcctgatgcagctcctggttcaaaatgcttct |
28081882 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28081883 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggcca---tgggaagtcgatgcctc |
28081952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 240 - 412
Target Start/End: Complemental strand, 27930262 - 27930090
Alignment:
| Q |
240 |
ctgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgct |
339 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
27930262 |
ctgtcgaacaaataattagatgatgataatgattgctggtcaaaagattggcaatgtctcagtgaagttcgcgatgcagctcctggttcaaaatgctgct |
27930163 |
T |
|
| Q |
340 |
taagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27930162 |
taagaaccatgttagatgtattgtaagatggaaacatttctattccctggccagaatgggaagtcgatgcctc |
27930090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 412
Target Start/End: Complemental strand, 27931083 - 27930906
Alignment:
| Q |
235 |
ttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| || |||||||||| |
|
|
| T |
27931083 |
ttgaactgttgaacaaatgattagatgatgataatgatcgttggtcaaaagattggcaatatctcagtgaagttcccaatgttgctcctagttcaaaatg |
27930984 |
T |
|
| Q |
335 |
ctgcttaagaaccatattagatgtattgtaagatggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27930983 |
ctccttaagaaccatattagaagtattgtaagatggaaacatttctattccctggccagaatgggaagtcgatgcctc |
27930906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 28080871 - 28080962
Alignment:
| Q |
207 |
gatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
298 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
28080871 |
gatcgctggtcaaaagattggcgatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtct |
28080962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 298
Target Start/End: Original strand, 28080804 - 28080899
Alignment:
| Q |
203 |
taacgatcgctggtcaaaagattggcaatgtcttgaactgttgaacaaatgattagatgatgataatgatcgctggtcaaaagattgacaatgtct |
298 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
28080804 |
taacgattgctgttcaaaaggttggcaatgtcttgaactgttgaaaaaatgattagatgatgataatgatcgctggtcaaaagattggcgatgtct |
28080899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 412
Target Start/End: Complemental strand, 27936101 - 27935957
Alignment:
| Q |
268 |
atgatcgctggtcaaaagattgacaatgtctcagtgaagttcccgatgcagctactggttcaaaatgctgcttaagaaccatattagatgtattgtaaga |
367 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||| | |||||| ||||| |||| |||| |||| |
|
|
| T |
27936101 |
atgatcgccgctcaaaagattggcaatgtctcagtgaagttcccaatgtagcttctggttcaaaatgatctttaagagccatactagaagtatcaaaaga |
27936002 |
T |
|
| Q |
368 |
tggaaacatttctattccctggccaggttgggaagtcgatgcctc |
412 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||| || |||||||| |
|
|
| T |
27936001 |
tggagccatttctattccccggccagcatgggatgttgatgcctc |
27935957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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