View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_12 (Length: 426)
Name: NF14912_low_12
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 330437 - 330047
Alignment:
| Q |
1 |
atgagatgagaccgggtgaagtaagatagaaacaaatatatttggcgtcgtcgcatatggtgtcagtaatttgttaagagttaagcccgtgagcccaaac |
100 |
Q |
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| T |
330437 |
atgagatgagaccggatgaagtaagatagaaacaaatatattaggcgtcgtcgcatatgatgtcagtaatttgttaagagttaagcccgtgagcccaaat |
330338 |
T |
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| Q |
101 |
caaaaactagttcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggtcacactaacttcatgtgttttaaatacttaagattt |
200 |
Q |
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| T |
330337 |
caaaaactagctcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagattt |
330238 |
T |
|
| Q |
201 |
gaaacaaatactaaacaagcaaacaaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctc |
300 |
Q |
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| T |
330237 |
gaaacaaatactaaacaagcaaacaaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctc |
330138 |
T |
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| Q |
301 |
ctatcaaattgaaattttgcacattccattgttggtaattcttaatattttatgtaaaatagcaaaatacagagacttgcaatctattggt |
391 |
Q |
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| T |
330137 |
ccatcaaattgaaattttgcacattccattactggtaattcttaatattttatgtaaaatagtaaaatacagagacttgcaatctattggt |
330047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 37223635 - 37223591
Alignment:
| Q |
98 |
aaccaaaaactagttcattaggtaggagagcctcgtggcttaagt |
142 |
Q |
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| T |
37223635 |
aaccaaaaactagtccattaggtgggagagcctaatggcttaagt |
37223591 |
T |
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