View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14912_low_16 (Length: 395)

Name: NF14912_low_16
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14912_low_16
NF14912_low_16
[»] scaffold0154 (2 HSPs)
scaffold0154 (13-377)||(14591-14955)
scaffold0154 (13-377)||(24011-24375)
[»] scaffold0189 (1 HSPs)
scaffold0189 (13-377)||(381-745)


Alignment Details
Target: scaffold0154 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 14591 - 14955
Alignment:
Q  13 attcttcgggaatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 112  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14591 attcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 14690  T
Q  113 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggttcct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  14691 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggttcct 14790  T
Q  213 ctgcattcgaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgatatcaccatcattgaataccaaaatattttgaagcttta 312  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  14791 ctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgatttcaccatcattgaaaaccaaaatattttgaagcttta 14890  T
Q  313 tatcacaatgaacgaatccattgcgatgaatgtgatcaagtccctcaacgattgatcttgtgtaa 377  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  14891 tatcacaatgaacaaatccattgcgatgaatgtgatcaagtccctcaacgattgacctcgtgtaa 14955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 24011 - 24375
Alignment:
Q  13 attcttcgggaatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 112  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24011 attcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 24110  T
Q  113 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggttcct 212  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  24111 taccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggttcct 24210  T
Q  213 ctgcattcgaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgatatcaccatcattgaataccaaaatattttgaagcttta 312  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24211 ctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgatttcaccatcattgaataccaaaatattttgaagcttta 24310  T
Q  313 tatcacaatgaacgaatccattgcgatgaatgtgatcaagtccctcaacgattgatcttgtgtaa 377  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  24311 tatcacaatgaacaaatccattgcgatgaatgtgatcaagtccctcaacgattgacctcgtgtaa 24375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 745 - 381
Alignment:
Q  13 attcttcgggaatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 112  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  745 attcttcgggtatcaccggcgattcttctccggtaccaatccgaagcaacaatgaccacatatttgaatctttctccaaattccatgctggttttccagt 646  T
Q  113 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggttcct 212  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || | ||||||||||||||| |||||||||||||| |||||     
T  645 taccatctccaccaccgcacacccaagtgcccatatatccgccggagattcatgctcaccgtggtttactgattccggcgacataaaaagtggagttccc 546  T
Q  213 ctgcattcgaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgatatcaccatcattgaataccaaaatattttgaagcttta 312  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  545 ctgcatttcaaactctgttttccccctgttttcttggcaagaccaaaatcagcaattttgatttcaccatcattgaacaccaaaatattttgaagcttta 446  T
Q  313 tatcacaatgaacgaatccattgcgatgaatgtgatcaagtccctcaacgattgatcttgtgtaa 377  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  445 tatcacaatgaacaaatccattgcgatgaatgtgatcaagtccctcaacgattgacctcgtgtaa 381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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