View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14912_low_18 (Length: 343)

Name: NF14912_low_18
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14912_low_18
NF14912_low_18
[»] chr1 (15 HSPs)
chr1 (1-343)||(34309552-34309899)
chr1 (146-255)||(45531903-45532012)
chr1 (152-255)||(45525799-45525902)
chr1 (146-226)||(35190668-35190748)
chr1 (146-226)||(35295645-35295725)
chr1 (146-226)||(35147654-35147734)
chr1 (146-222)||(35205250-35205326)
chr1 (146-194)||(35476643-35476691)
chr1 (146-215)||(35200237-35200306)
chr1 (146-222)||(35212292-35212368)
chr1 (146-226)||(35219396-35219476)
chr1 (146-226)||(35225239-35225319)
chr1 (148-224)||(35252395-35252471)
chr1 (146-193)||(35248593-35248640)
chr1 (146-194)||(35216256-35216304)
[»] chr2 (1 HSPs)
chr2 (146-271)||(33138357-33138482)
[»] chr3 (5 HSPs)
chr3 (56-283)||(899409-899642)
chr3 (149-258)||(23332094-23332203)
chr3 (149-274)||(19246711-19246836)
chr3 (149-274)||(17664304-17664433)
chr3 (151-210)||(53924101-53924160)
[»] chr7 (2 HSPs)
chr7 (146-258)||(38632183-38632295)
chr7 (146-228)||(38634919-38635001)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 34309552 - 34309899
Alignment:
Q  1 cgatgggggcaccagccataacatttacnnnnnnnttgcctgacacgatgtttcacgttcggatccaaacagacagatttagtgctgctat----agctt 96  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||    
T  34309552 cgatgggggcaccagccataacatttacaaaaaaattgcctgacacgatgtttcacgttcggatccaaacagacagatttagtgctgctatgtccacctt 34309651  T
Q  97 caacaccaacggataaatccataggttcattatcaaatctgtatgcatta-tcatcttgaacacgagataagccgcatactgagtatttggggacaagga 195  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34309652 caacaccaacggataaatccataggttcattatcaaatccgtatgcattaatcatcttgaacacgagataagccgcatactgagtatttggggacaagga 34309751  T
Q  196 aagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttagcaacttcaggaaacaggtaaaaattgcaaagacaaagaatacaagaa 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34309752 aagagtgttaatcatcccacgaatttcaagcgagtacacaagacaaagcttagcaacttcaggaaacatgtaaaaattgcaaagacaaagaatacaagaa 34309851  T
Q  296 ctgtgnnnnnnnngttgaaagtgattcatattatcacatatgaagtat 343  Q
    |||||        |||||||||||||||||||||||||||||||||||    
T  34309852 ctgtgaaaaaaaagttgaaagtgattcatattatcacatatgaagtat 34309899  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 45531903 - 45532012
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagct 245  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||| |||||| ||| |  ||||||||||||| |    
T  45531903 atcattttgaacacaagataagctgcatattgagtatttggggacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacaaagtt 45532002  T
Q  246 tagcaacttc 255  Q
    ||||||||||    
T  45532003 tagcaacttc 45532012  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 45525799 - 45525902
Alignment:
Q  152 ttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttagcaa 251  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| ||| |  ||||||||| ||| |||||||    
T  45525799 ttgaacacgagataagctgcatactgagtatttggagacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacgaagattagcaa 45525898  T
Q  252 cttc 255  Q
    ||||    
T  45525899 cttc 45525902  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 35190668 - 35190748
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 226  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| ||| || || |||||||||| ||| ||||||    
T  35190668 atcatcttgaacacaagataagccgcatactgggtatttggggacaaggcaagggtatttatcatcccacgaatatcaagc 35190748  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 35295725 - 35295645
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 226  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||| | | ||||| |||||||||| ||||||||||    
T  35295725 atcatcttgaacacaagataagctgcatattgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagc 35295645  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 35147654 - 35147734
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 226  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||  ||| ||||| ||| |||||| ||| ||||||    
T  35147654 atcatcttgaacacaagataagccgcatactgggtatttggggacaagctaagggtgtttatcgtcccactaatatcaagc 35147734  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 35205250 - 35205326
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttc 222  Q
    |||||||||||||| |||||||| ||||| ||||||||||| ||||| | |||| ||||||||||||||| ||||||    
T  35205250 atcatcttgaacacaagataagctgcatattgagtatttggagacaatgcaagattgttaatcatcccacgaatttc 35205326  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 35476643 - 35476691
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaagg 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35476643 atcatcttgaacacaagataagccgcatactgagtatttggggacaagg 35476691  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 35200237 - 35200306
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 215  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| | |||  |||| ||||||||||    
T  35200237 atcatcttgaacacaagataagctgcatactgagtatttggggacaatgcaagcatgtttatcatcccac 35200306  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 35212292 - 35212368
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttc 222  Q
    |||||||||||||| ||||||||||||||  |||||||||| ||||||| ||||  |||||||| ||||| ||||||    
T  35212292 atcatcttgaacacaagataagccgcatagcgagtatttggagacaaggcaagatcgttaatcaccccacgaatttc 35212368  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 35219396 - 35219476
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 226  Q
    |||||||||||||| |||||||  |||||| |||||||||| ||||||| ||| ||||| ||| | |||||||||||||||    
T  35219396 atcatcttgaacacaagataagttgcatacagagtatttggagacaaggtaagggtgtttatcttgccacaaatttcaagc 35219476  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 35225239 - 35225319
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 226  Q
    |||||||||||||| |||||||   ||||| |||||||||||||||||| ||| ||||| | | |||||| ||||||||||    
T  35225239 atcatcttgaacacaagataagttacataccgagtatttggggacaaggcaagggtgtttaacttcccacgaatttcaagc 35225319  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 35252395 - 35252471
Alignment:
Q  148 catcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaa 224  Q
    |||||||||||| ||||| ||  |||||||||||||||||||||||| ||  ||||| ||||| |||||||| ||||    
T  35252395 catcttgaacacaagatacgctacatactgagtatttggggacaaggcaatggtgtttatcataccacaaatgtcaa 35252471  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 35248593 - 35248640
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaag 193  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  35248593 atcaccttgaacacaagataagctgcatactgagtatttggggacaag 35248640  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 35216256 - 35216304
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaagg 194  Q
    |||||||| ||||| |||||||  ||||||||||||||||| |||||||    
T  35216256 atcatcttaaacacaagataagttgcatactgagtatttggagacaagg 35216304  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 33138482 - 33138357
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagct 245  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||| |||| ||||||    
T  33138482 atcatcttgaacacgagataagccgcgtactgagtatttggggacaaggaaagagtgttaatagtcccacgaatttcatgcgagtacaaaagagaaagct 33138383  T
Q  246 tagcaacttcaggaaacaggtaaaaa 271  Q
    |||||||||||||||||  |||||||    
T  33138382 tagcaacttcaggaaacctgtaaaaa 33138357  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 283
Target Start/End: Complemental strand, 899642 - 899409
Alignment:
Q  56 cgttcggatccaaacagacagatttagtgctgctatagc----ttcaacaccaacggataaatccataggttcattatcaaatctgtatgcatta-tcat 150  Q
    |||| |||||||||||||| ||||||||||| |||| ||    | | ||| |||  ||||  |||||||||||||| |||||||  ||  ||| | ||||    
T  899642 cgtttggatccaaacagacggatttagtgctactatggccacctactacatcaattgataggtccataggttcattctcaaatccataatcatcaatcat 899543  T
Q  151 cttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttagca 250  Q
    ||||||||| |||||||||||||||  ||||||| |||||||||||| ||||||||| || |||| ||||||||||||| ||||||||||||||||| |     
T  899542 cttgaacacaagataagccgcataccaagtattttgggacaaggaaaaagtgttaattattccacgaatttcaagcgagaacacaagacaaagcttaacg 899443  T
Q  251 acttcaggaaacaggtaaa-aattgcaaagacaa 283  Q
    ||||||||||||  ||||| ||||||||||||||    
T  899442 acttcaggaaacctgtaaataattgcaaagacaa 899409  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 23332094 - 23332203
Alignment:
Q  149 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttag 248  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||||    
T  23332094 atcttaaacacgaggtaagctgcatactgagtatttggggacaatgaaagagtgttaataatcccacaaatttcatgcgagaacaaaagacgaagcttag 23332193  T
Q  249 caacttcagg 258  Q
    ||||||||||    
T  23332194 caacttcagg 23332203  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 19246836 - 19246711
Alignment:
Q  149 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttag 248  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||||| ||||| |||||||||  |||||||    
T  19246836 atcttgaagacgagataagctgcatactgagtatttggggacaaggaaagagtcttaataataccacgaatttcatgcgagaacacaagactgagcttag 19246737  T
Q  249 caacttcaggaaacaggtaaaaattg 274  Q
    ||||||| || |||  ||||||||||    
T  19246736 caacttccgggaacctgtaaaaattg 19246711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 17664433 - 17664304
Alignment:
Q  149 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagt----gttaatcatcccacaaatttcaagcgagtacacaagacaaagc 244  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||     ||||| || |||| ||||||| ||||| |||||||||  |||    
T  17664433 atcttgaagacgagataagctgcatactgagtatttggggacaatgaaagagtcttaattaataataccacgaatttcatgcgagaacacaagactgagc 17664334  T
Q  245 ttagcaacttcaggaaacaggtaaaaattg 274  Q
    ||||||||||| || |||  ||||||||||    
T  17664333 ttagcaacttccgggaacctgtaaaaattg 17664304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 53924160 - 53924101
Alignment:
Q  151 cttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcat 210  Q
    ||||||||| ||||||||||||||| |||||||||||||||||  ||| ||||| |||||    
T  53924160 cttgaacacaagataagccgcataccgagtatttggggacaagacaagggtgtttatcat 53924101  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 38632183 - 38632295
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagct 245  Q
    |||| ||||||||| ||||||||  |||||||||||||| | ||||||| ||||||||  ||| | |||| ||||||||||||  |||||  || |||||    
T  38632183 atcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagct 38632282  T
Q  246 tagcaacttcagg 258  Q
     ||||||||||||    
T  38632283 cagcaacttcagg 38632295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 38634919 - 38635001
Alignment:
Q  146 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcga 228  Q
    ||||||| |||||| ||||||||  |||||||||||||| |||||||| |||||||||| ||  | |||| ||||||||||||    
T  38634919 atcatctggaacacaagataagctacatactgagtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcga 38635001  T

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