View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14912_low_27 (Length: 293)

Name: NF14912_low_27
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14912_low_27
NF14912_low_27
[»] chr2 (15 HSPs)
chr2 (19-286)||(39768463-39768727)
chr2 (42-261)||(34385374-34385589)
chr2 (36-206)||(6469093-6469264)
chr2 (141-206)||(44939855-44939920)
chr2 (45-88)||(3153592-3153635)
chr2 (141-254)||(3153688-3153798)
chr2 (33-96)||(14164128-14164191)
chr2 (33-79)||(20634809-20634855)
chr2 (141-206)||(10059967-10060032)
chr2 (49-112)||(32171050-32171113)
chr2 (141-206)||(79400-79465)
chr2 (160-274)||(14163955-14164064)
chr2 (169-240)||(16203029-16203097)
chr2 (165-193)||(17930733-17930761)
chr2 (213-257)||(23390576-23390620)
[»] chr5 (14 HSPs)
chr5 (31-246)||(38436647-38436861)
chr5 (33-283)||(16422022-16422267)
chr5 (39-252)||(13641004-13641213)
chr5 (43-206)||(10468851-10469014)
chr5 (43-206)||(26501456-26501619)
chr5 (98-258)||(42495279-42495433)
chr5 (43-206)||(28639108-28639271)
chr5 (34-94)||(841720-841780)
chr5 (141-254)||(3417547-3417657)
chr5 (165-246)||(38707159-38707237)
chr5 (49-95)||(20974090-20974136)
chr5 (165-234)||(40526010-40526077)
chr5 (205-254)||(841562-841611)
chr5 (169-240)||(33023571-33023639)
[»] chr6 (12 HSPs)
chr6 (19-263)||(23651238-23651479)
chr6 (36-206)||(17713940-17714110)
chr6 (43-206)||(33754523-33754686)
chr6 (45-88)||(1309021-1309064)
chr6 (141-254)||(3490290-3490400)
chr6 (45-88)||(16467162-16467205)
chr6 (141-254)||(31933830-31933940)
chr6 (141-206)||(16467044-16467109)
chr6 (48-88)||(5874966-5875006)
chr6 (45-88)||(33146822-33146865)
chr6 (144-206)||(26710858-26710920)
chr6 (141-206)||(1309117-1309182)
[»] chr3 (21 HSPs)
chr3 (31-154)||(25449582-25449705)
chr3 (85-272)||(37835697-37835880)
chr3 (43-197)||(33980651-33980805)
chr3 (43-206)||(19653109-19653272)
chr3 (127-197)||(27874342-27874412)
chr3 (164-251)||(8845645-8845728)
chr3 (45-252)||(7922265-7922469)
chr3 (141-252)||(40969796-40969904)
chr3 (165-251)||(26376655-26376738)
chr3 (127-206)||(15372317-15372396)
chr3 (127-206)||(25617525-25617604)
chr3 (45-88)||(30937013-30937056)
chr3 (141-197)||(19232720-19232776)
chr3 (48-88)||(40969957-40969997)
chr3 (39-86)||(14608772-14608819)
chr3 (45-88)||(16896929-16896972)
chr3 (45-88)||(19232829-19232872)
chr3 (45-88)||(31644673-31644716)
chr3 (156-206)||(50029074-50029124)
chr3 (141-206)||(50543105-50543170)
chr3 (141-254)||(16897025-16897136)
[»] chr4 (24 HSPs)
chr4 (45-256)||(25459378-25459586)
chr4 (33-206)||(7446385-7446559)
chr4 (33-197)||(14528382-14528546)
chr4 (42-206)||(32045394-32045558)
chr4 (43-206)||(10009541-10009704)
chr4 (42-245)||(5592217-5592413)
chr4 (42-245)||(48125957-48126153)
chr4 (33-94)||(8933072-8933133)
chr4 (156-257)||(2398398-2398496)
chr4 (139-206)||(13840833-13840900)
chr4 (43-181)||(38654759-38654897)
chr4 (45-88)||(38948231-38948274)
chr4 (45-88)||(53679467-53679510)
chr4 (33-79)||(17995281-17995327)
chr4 (144-252)||(19836717-19836822)
chr4 (146-264)||(8933185-8933300)
chr4 (141-197)||(19310037-19310093)
chr4 (141-254)||(38948327-38948437)
chr4 (205-252)||(54037041-54037088)
chr4 (48-94)||(19836872-19836918)
chr4 (150-234)||(20248751-20248832)
chr4 (165-206)||(36188706-36188747)
chr4 (35-88)||(43470149-43470202)
chr4 (141-197)||(53679563-53679619)
[»] chr1 (17 HSPs)
chr1 (43-206)||(35368283-35368446)
chr1 (76-206)||(32641496-32641626)
chr1 (43-206)||(36193150-36193313)
chr1 (127-206)||(31458880-31458959)
chr1 (33-151)||(31071877-31071995)
chr1 (45-88)||(10386267-10386310)
chr1 (51-206)||(22560145-22560300)
chr1 (33-196)||(48433785-48433948)
chr1 (156-206)||(24561539-24561589)
chr1 (76-206)||(51128544-51128674)
chr1 (141-206)||(10386363-10386428)
chr1 (141-254)||(6333081-6333191)
chr1 (169-238)||(20417613-20417679)
chr1 (49-95)||(39495903-39495949)
chr1 (34-88)||(51169824-51169878)
chr1 (49-86)||(50092459-50092496)
chr1 (165-193)||(39415833-39415861)
[»] chr8 (8 HSPs)
chr8 (34-194)||(38891708-38891868)
chr8 (141-254)||(24732720-24732830)
chr8 (141-254)||(41692210-41692320)
chr8 (141-206)||(13403707-13403772)
chr8 (141-206)||(43599114-43599179)
chr8 (169-247)||(15045898-15045973)
chr8 (45-88)||(13403825-13403868)
chr8 (164-197)||(12230380-12230413)
[»] chr7 (15 HSPs)
chr7 (34-94)||(39295716-39295776)
chr7 (33-123)||(45846157-45846247)
chr7 (45-88)||(4163782-4163825)
chr7 (45-88)||(34206073-34206116)
chr7 (141-258)||(39295823-39295937)
chr7 (45-88)||(43109258-43109301)
chr7 (31-197)||(8606775-8606941)
chr7 (48-94)||(45459169-45459215)
chr7 (141-206)||(4163664-4163729)
chr7 (141-206)||(34205955-34206020)
chr7 (141-206)||(43109354-43109419)
chr7 (141-206)||(45459057-45459122)
chr7 (156-238)||(21431392-21431471)
chr7 (129-197)||(32703089-32703157)
chr7 (127-197)||(13773033-13773103)
[»] scaffold0217 (1 HSPs)
scaffold0217 (139-197)||(8246-8304)
[»] scaffold0394 (1 HSPs)
scaffold0394 (39-206)||(5136-5302)
[»] scaffold0674 (1 HSPs)
scaffold0674 (33-79)||(2685-2731)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 39768463 - 39768727
Alignment:
Q  19 gttacggtctgtgccggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaa 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39768463 gttacggtctgtgccggtctttcttacatgtgatttggctttgtagtatttgggttctttggaatgaaaggaaccataaactctttgctaataaagccaa 39768562  T
Q  119 ctcgatcttgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtgg 218  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||   ||||||||||||||    
T  39768563 ctcgatcttgcagctcttgaaaaaggttaagattacatcttttcggtgattgaaagctaaaaatgtttgctttccttttagtt---atcatatgtggtgg 39768659  T
Q  219 caacatcctcttgtctgtttggagattgactgatgtttttatttttcacttataactttgttcctatg 286  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  39768660 cagcatcctcttgtctgtttggggattgactgatgtttttatttttcacttataactttgttcttatg 39768727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 34385589 - 34385374
Alignment:
Q  42 ttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaa 141  Q
    ||||||||||||||||||| | |||||||| | |||||||||||||||||||||| ||||||||| |||||||  ||||| | | |||| | |||| |||    
T  34385589 ttacatttgatttggctttattgtatttgggtcctttggaatgaaaggaaccatagactctttgcaaataaagttaactcaaccgtgcaacccttggaaa 34385490  T
Q  142 aggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgga 241  Q
    ||||||||||  | ||||||| ||||||||||| ||||||||| || |||||||||  ||   |  || | |||||||| ||||| ||||| ||||| |     
T  34385489 aggttaagatgtc-tctcttcagtggttgaaagataaaaatgtgtgttttccttttggtt---actatttatggtggcagcatccccttgtttgtttagg 34385394  T
Q  242 gattgactgatgtttttatt 261  Q
    ||||||||||||||||||||    
T  34385393 gattgactgatgtttttatt 34385374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 6469264 - 6469093
Alignment:
Q  36 tctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctct 135  Q
    ||||||||||||||||||||||||||| | |||||| || |||| |||||||| || || |  |||||||| || |||| |||   |||  ||||||| |    
T  6469264 tctttcttacatttgatttggctttgttgcatttgggttatttgaaatgaaagaaatcaaaggctctttgcgaacaaagtcaatatgatggtgcagcttt 6469165  T
Q  136 t-gaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    | |||||||||||||||    |||||||| |||||||||||||||||||| ||||||||||||  |||||||    
T  6469164 tagaaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcat 6469093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 44939920 - 44939855
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| |||||||||||| ||||||||    
T  44939920 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttgattatcat 44939855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 3153592 - 3153635
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  3153592 catttgatttggctttgtggtatttgggttctttggaatgaaag 3153635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 3153688 - 3153798
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||  ||   ||||| | |||||||| | ||| ||||| ||||| |    
T  3153688 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggtt---atcatttatggtggcagcgtccccttgtttgtttag 3153784  T
Q  241 agattgactgatgt 254  Q
     |||||||||||||    
T  3153785 ggattgactgatgt 3153798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 14164191 - 14164128
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccata 96  Q
    ||||| |||||||||||| ||||||| ||| |||| ||| ||||||||| ||||||||||||||    
T  14164191 cggtcattcttacatttggtttggctatgttgtatgtgggttctttggactgaaaggaaccata 14164128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 20634855 - 20634809
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttg 79  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  20634855 cggtcattcttgcatttgatttggctttgttgtatttggattctttg 20634809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 10060032 - 10059967
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||  |||||||    
T  10060032 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcat 10059967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 32171113 - 32171050
Alignment:
Q  49 tgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataa 112  Q
    |||||||||||||| |||||||| |||| | |||||||||||||||| || | ||| |||||||    
T  32171113 tgatttggctttgttgtatttgggttctatcgaatgaaaggaaccatcaattgttttctaataa 32171050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 79465 - 79400
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||| ||||| |||||||| ||||||||||||  |||||||    
T  79465 aaggttaagattacatctctcaaatggttaaaagcaaaaaatgtgtgctttccttttggttatcat 79400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 14164064 - 14163955
Alignment:
Q  160 ttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagattgactgatgttttta 259  Q
    |||||||||||||||| |||||||| |||||||| |||  ||   ||||||||||||||||  |||| ||||  ||||||| ||||| | || |  ||||    
T  14164064 ttcggtggttgaaagcaaaaaatgtgtgctttccctttggtt---atcatatgtggtggcagaatccccttgcatgtttggggattggccgaag--ttta 14163970  T
Q  260 tttttcacttataac 274  Q
    ||||||| |||||||    
T  14163969 tttttcatttataac 14163955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 16203029 - 16203097
Alignment:
Q  169 tgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    |||||||||||||||| || |||||||||  ||||||   ||||||||| || || ||||||||||||||||    
T  16203029 tgaaagctaaaaatgtatgttttccttttggttatca---tatgtggtgacagcaacctcttgtctgtttgg 16203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 17930761 - 17930733
Alignment:
Q  165 tggttgaaagctaaaaatgtttgctttcc 193  Q
    |||||||||||||||||||||||||||||    
T  17930761 tggttgaaagctaaaaatgtttgctttcc 17930733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 23390576 - 23390620
Alignment:
Q  213 tggtggcaacatcctcttgtctgtttggagattgactgatgtttt 257  Q
    |||||||| ||||| ||||||||||||| ||| ||||||||||||    
T  23390576 tggtggcagcatccccttgtctgtttggggatagactgatgtttt 23390620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 38436861 - 38436647
Alignment:
Q  31 gccggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgca 130  Q
    ||||||| |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||||||||| ||  ||||| |||   ||||    
T  38436861 gccggtccttcttacatttgatttggctttgttgcatttgggttctttggaatgaaaggaaccatagactctttgctaacaagaccaacacgactgtgca 38436762  T
Q  131 gctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctctt 230  Q
    |||  || ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||   | |||| ||||||||||||| || || |||    
T  38436761 gcttctggaaaaggttaagatcacatctcttcggtggttgaaagttaaaaatgtttgctttccttttggctttcat-atatgtggtggcagcaacccctt 38436663  T
Q  231 gtctgtttggagattg 246  Q
    || ||||||| |||||    
T  38436662 gtgtgtttggggattg 38436647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 33 - 283
Target Start/End: Original strand, 16422022 - 16422267
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagc 132  Q
    ||||| |||||||||||||||||||||| | |||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||||||| | |||| |    
T  16422022 cggtcattcttacatttgatttggctttcttgtatttgggtcctttggaatgaaaggaaccatatactctttgcaaataaagtcaactcgaccgtgcaac 16422121  T
Q  133 tcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgt 232  Q
    ||||| ||||| |||||||  | |||||| |||||||||||||||||||||| || ||| || || |||    ||||||||||||||| ||||| |||||    
T  16422122 tcttggaaaagcttaagatgtcttctctttggtggttgaaagctaaaaatgtgtgtttttctcttgatt---gtcatatgtggtggcagcatccccttgt 16422218  T
Q  233 ctgtttggagattgactgatgtttttatttttcacttataactttgttcct 283  Q
     ||||||  |||||||||||| |||||||||| | ||||||| ||||||||    
T  16422219 ttgtttgaggattgactgatg-ttttattttt-atttataaccttgttcct 16422267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 13641004 - 13641213
Alignment:
Q  39 ttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttga 138  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||| |||||||||||||||||  |  || | || ||||||     
T  13641004 ttcttacatttgatttggctttgttgtatttgggttctctggaatgaaaggaaccatagactgtttgctaataaagccaaaacagtcattcaactcttgg 13641103  T
Q  139 aaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgttt 238  Q
    |||||||||| |||||| |  ||| ||||||||||  ||||||||| ||| ||||||||| ||   |||||||||| ||| |||||||  |||| |||||    
T  13641104 aaaaggttaaaattacaaccattcagtggttgaaacataaaaatgtgtgc-ttccttttagtt---atcatatgtgctggtaacatccctttgtttgttt 13641199  T
Q  239 ggagattgactgat 252  Q
    || |||||||||||    
T  13641200 ggggattgactgat 13641213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 10469014 - 10468851
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | |||||| || |||| ||||||||||| || | ||||||||| || ||||||||  |||   ||||||| ||| ||||    
T  10469014 tacatttgatttggctatgttgcatttgggttatttgaaatgaaaggaatcaaagactctttgcgaacaaagccaatacgacggtgcagcttttggaaaa 10468915  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| |    |||||||| |||||||||||||||||||| ||||||||||||  |||||||    
T  10468914 ggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcat 10468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 26501619 - 26501456
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | |||||| || ||||||||||||| || || |  ||||||||| | ||||||||  || |  ||||||||||| ||||    
T  26501619 tacatttgatttggctatgttgcatttgggttatttggaatgaaagaaatcaaaggctctttgctcacaaagccaatacggtggtgcagctcttggaaaa 26501520  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| |    |||||||| |||||||||||||||||||| |||| |||||||  |||||||    
T  26501519 ggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgctctccttttggttatcat 26501456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 42495433 - 42495279
Alignment:
Q  98 actctttgctaataaagccaactcgatcttgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    |||||||||||||||||| ||| ||| | |||| || ||| ||||||||||||||||||||||| ||||| ||||||| |||||||| || ||| |||||    
T  42495433 actctttgctaataaagcaaacacgaccgtgcaactattggaaaaggttaagattacatctctttggtggctgaaagccaaaaatgtgtgtttttctttt 42495334  T
Q  198 aattatcatcatatgtggtggcaacatcctcttgtctgtttggagattgactgatgttttt 258  Q
      ||   |||||||||||||| | |  || ||||| ||||||| |||||||||||||||||    
T  42495333 ggtt---atcatatgtggtggtagc--ccccttgt-tgtttggggattgactgatgttttt 42495279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 28639108 - 28639271
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | |||||| || | ||||||||||| || || | ||||||||| || ||||||||  |||   ||||||| ||| ||||    
T  28639108 tacatttgatttggctatgttgcatttgggttatctggaatgaaagaaatcaaagactctttgcgaacaaagccaatacgacgatgcagcttttggaaaa 28639207  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    |||||| ||    |||||||| ||||||||||| |||||||| ||||||||||||  |||||||    
T  28639208 ggttaaaatgtattctcttcgttggttgaaagccaaaaatgtgtgctttccttttggttatcat 28639271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 841780 - 841720
Alignment:
Q  34 ggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaacca 94  Q
    |||||||| |||||||||||||||||||| |||||||| |||||| ||||||||| |||||    
T  841780 ggtctttcctacatttgatttggctttgtggtatttgggttctttcgaatgaaagaaacca 841720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 3417657 - 3417547
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||||||||||    || ||||||||  ||||||| ||||||||||||  |||||||   ||||||||||| | ||| ||||  ||||| |    
T  3417657 aaggttaagattacatctctcaaatgattgaaagcacaaaatgtgtgctttccttttggttatcat---atgtggtggcagcgtccccttgcttgtttag 3417561  T
Q  241 agattgactgatgt 254  Q
     |||||||||||||    
T  3417560 ggattgactgatgt 3417547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 38707237 - 38707159
Alignment:
Q  165 tggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagattg 246  Q
    ||||||||||||| |||||||||||||||||||  ||   |||||||||||||||| ||  |||| || ||||||| |||||    
T  38707237 tggttgaaagctagaaatgtttgctttccttttggtt---atcatatgtggtggcatcaatctctagtttgtttggggattg 38707159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 20974090 - 20974136
Alignment:
Q  49 tgatttggctttgtagtatttggattctttggaatgaaaggaaccat 95  Q
    |||||||||||||| |||||||| || | ||||||||||||||||||    
T  20974090 tgatttggctttgttgtatttgggttatgtggaatgaaaggaaccat 20974136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 40526010 - 40526077
Alignment:
Q  165 tggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtct 234  Q
    |||||||||||||||||||| || |||| ||||  |||||||  |||||||||||| || ||||||||||    
T  40526010 tggttgaaagctaaaaatgtatgttttctttttggttatcat--tatgtggtggcatcaacctcttgtct 40526077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 841611 - 841562
Alignment:
Q  205 atcatatgtggtggcaacatcctcttgtctgtttggagattgactgatgt 254  Q
    |||||||||||||||||| ||| ||||  ||||||| |||||||||||||    
T  841611 atcatatgtggtggcaacgtccccttgcttgtttggggattgactgatgt 841562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 33023571 - 33023639
Alignment:
Q  169 tgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    |||||||||||||||| || |||||||||  ||||||   ||||||| |||| || ||||||||||||||||    
T  33023571 tgaaagctaaaaatgtgtgttttccttttggttatca---tatgtggcggcatcaacctcttgtctgtttgg 33023639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 23651479 - 23651238
Alignment:
Q  19 gttacggtctgtgccggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaa 118  Q
    |||||| |||| | ||||| ||||||||||||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||||||||||||||||    
T  23651479 gttacgctctgcgacggtcattcttacatttgatttggctttgttatatttgggttctctgaaatgaaaggaaccatagactctttgctaataaagccaa 23651380  T
Q  119 ctcgatcttgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtgg 218  Q
    | | | | |||||||| |  |||||||||| ||||||||||||||||| |||| ||||||| || | || || |||||   || | | |||||||  ||     
T  23651379 cacaaccatgcagctcctagaaaaggttaaaattacatctcttcggtgtttgagagctaaatatatgtgattcccttt---ttgttaccatatgtaatga 23651283  T
Q  219 caacatcctcttgtctgtttggagattgactgatgtttttatttt 263  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  23651282 caacatcctcttgtttgtttggggattgactgatgtttttatttt 23651238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 17713940 - 17714110
Alignment:
Q  36 tctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctct 135  Q
    ||||| ||||||||||||||||| ||| | |||||| || ||||||||||||| || || | |||||||||||| ||||||||  ||||  ||||||| |    
T  17713940 tcttttttacatttgatttggctctgttgcatttgggttatttggaatgaaagaaatcaaagactctttgctaacaaagccaatacgatggtgcagcttt 17714039  T
Q  136 tgaaaaaggttaagat-tacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    || ||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  17714040 tggaaaaggttaagttgtac-tctcttcggtggttgaaagctaaaaatgtgtgctttccttttggttatcat 17714110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 33754523 - 33754686
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||| | ||| | |||||| || | ||||||||||||||||| | | | |||||  | ||||||||  ||||  ||||||| ||  ||||    
T  33754523 tacatttgatttggttatgttgcatttgggttatatggaatgaaaggaaccaaagattatttgcggacaaagccaatacgatggtgcagcttttagaaaa 33754622  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| |    |||||||| |||||||||||||||||||| ||||||||||||  |||||||    
T  33754623 ggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcat 33754686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 1309021 - 1309064
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  1309021 catttgatttggctttgtggtatttgggttctttggaatgaaag 1309064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 3490290 - 3490400
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||| |||||||   ||||||||||| |||||||| ||||||||||||  ||   | |||||||||||||| | ||| |||   |||||||    
T  3490290 aaggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggtt---accatatgtggtggcagcgtccccttacttgtttgg 3490386  T
Q  241 agattgactgatgt 254  Q
     |||||||||||||    
T  3490387 ggattgactgatgt 3490400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 16467205 - 16467162
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  16467205 catttgatttggctttgtggtatttgggttctttggaatgaaag 16467162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 31933940 - 31933830
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||| |||||||   ||||||||||| |||||||| ||||||||||||  ||   | |||||||||||||| | ||| |||   |||||||    
T  31933940 aaggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggtt---accatatgtggtggcagcgtccccttacttgtttgg 31933844  T
Q  241 agattgactgatgt 254  Q
     |||||||||||||    
T  31933843 ggattgactgatgt 31933830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 16467109 - 16467044
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||| | |||||||| |||||||||||| ||||||||    
T  16467109 aaggttaagattacatctctcaaatggttgaaaacaaaaaatgtgtgctttccttttgattatcat 16467044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 5874966 - 5875006
Alignment:
Q  48 ttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  5874966 ttgatttggctttgtggtatttgggttctttggaatgaaag 5875006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 33146822 - 33146865
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||    
T  33146822 catttgatttggttttgtggtatttgggttctttggaatgaaag 33146865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 26710920 - 26710858
Alignment:
Q  144 gttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    |||||||||||||||||    ||||||||||| |||||||| ||||||||||||  |||||||    
T  26710920 gttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcat 26710858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 1309117 - 1309182
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| || |||||||||  |||||||    
T  1309117 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgttttccttttggttatcat 1309182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 25449705 - 25449582
Alignment:
Q  31 gccggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgca 130  Q
    ||||||||||||||||||||||||||||||||||||||||| |  ||||||||| || |||||||| |||||||||||||||||||||||||| | ||||    
T  25449705 gccggtctttcttacatttgatttggctttgtagtatttgggtcatttggaatggaaagaaccatagactctttgctaataaagccaactcgaccgtgca 25449606  T
Q  131 gctcttgaaaaaggttaagattac 154  Q
    ||||||| |||| |||||||||||    
T  25449605 gctcttggaaaatgttaagattac 25449582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 272
Target Start/End: Original strand, 37835697 - 37835880
Alignment:
Q  85 aaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgt 184  Q
    |||||||||||| ||| |||||| | ||||||||  |||   |||| || |||||||||||||||||    |||||| |||||||||||||||||||| |    
T  37835697 aaaggaaccatagactttttgctgacaaagccaatacgacggtgcaactattgaaaaaggttaagatgtattctcttgggtggttgaaagctaaaaatat 37835796  T
Q  185 ttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagattgactgatgtttttatttttcacttata 272  Q
     || |||| |||   |  |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||    
T  37835797 atgttttctttt---tggtcatcatatgtggtggcaacatccccttgtttgtttggagattgactgatg-ttttatttttcatttata 37835880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 33980805 - 33980651
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | || ||| |  ||||||||||||| || |||| ||||||||  || ||||||||  ||||  ||||||| ||| ||||    
T  33980805 tacatttgatttggctctgttgcatctgggtaatttggaatgaaagaaatcatagactctttgagaacaaagccaatacgatggtgcagcttttggaaaa 33980706  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    |||||||||    |||||||| |||||||||||||||||||| ||||||||||||    
T  33980705 ggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttcctttt 33980651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 19653109 - 19653272
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||| | ||| | |||||| || ||||||||||||||||||| | | | |||||  | ||||||||  ||||  ||||||| ||  ||||    
T  19653109 tacatttgatttggttatgttgcatttgggttatttggaatgaaaggaaccaaagattatttgcggacaaagccaatacgatggtgcagcttttagaaaa 19653208  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| |    |||||||  |||||||||||||||||||| ||||||||||||  |||||||    
T  19653209 ggttaagttgtattctcttcattggttgaaagctaaaaatgtgtgctttccttttggttatcat 19653272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 27874412 - 27874342
Alignment:
Q  127 tgcagctcttgaaaaaggttaagat-tacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    ||||||||||| ||||||||||| | ||| |||||||| |||||||||||||||||||| ||||||||||||    
T  27874412 tgcagctcttggaaaaggttaagttgtac-tctcttcgttggttgaaagctaaaaatgtgtgctttcctttt 27874342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 8845645 - 8845728
Alignment:
Q  164 gtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagattgactga 251  Q
    |||||||||||||||||||||||| ||||||||| ||    | |||||||||||||  || |||||||| ||||||| ||||||||||    
T  8845645 gtggttgaaagctaaaaatgtttgttttccttttgat----accatatgtggtggctgcaacctcttgtgtgtttggggattgactga 8845728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 252
Target Start/End: Original strand, 7922265 - 7922469
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaagg 144  Q
    |||||||||||||||| | | |||||| || ||||||||||||| ||||| |||   |||||||| ||| | ||  | ||  ||||||| ||| |||| |    
T  7922265 catttgatttggctttattgcatttgggttatttggaatgaaagaaaccaaaaaaattttgctaacaaaactaatacaatggtgcagctattggaaaaag 7922364  T
Q  145 ttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagat 244  Q
    |||||||    |||||    ||||| ||| |||||||||| ||||||||||||  |||||||    | |||||||||||||| ||||||||||||| |||    
T  7922365 ttaagatgtattctctcgactggttaaaaactaaaaatgtgtgctttccttttggttatcatt---tatggtggcaacatccccttgtctgtttggggat 7922461  T
Q  245 tgactgat 252  Q
    || |||||    
T  7922462 tggctgat 7922469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 40969904 - 40969796
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||||||||||   |||||||||||| |||||||| |||||||| |||  ||   |||||||||||||||||| |||  |||  |||||||    
T  40969904 aaggttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggtt---atcatatgtggtggcaacgtccctttgcttgtttgg 40969808  T
Q  241 agattgactgat 252  Q
     ||||| |||||    
T  40969807 ggattggctgat 40969796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 26376655 - 26376738
Alignment:
Q  165 tggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagattgactga 251  Q
    |||||||||||||| ||||||||||||||||||  ||   | ||||||||||||||||| || ||||| ||||||| ||||| ||||    
T  26376655 tggttgaaagctaagaatgtttgctttccttttggtt---accatatgtggtggcaacaaccccttgtttgtttggggattggctga 26376738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 15372317 - 15372396
Alignment:
Q  127 tgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| ||| |||||||||||||    |||||||  |||||||||||||||||||| ||||||||||||  |||||||    
T  15372317 tgcagcttttggaaaaggttaagatgtattctcttcattggttgaaagctaaaaatgtgtgctttccttttggttatcat 15372396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 25617525 - 25617604
Alignment:
Q  127 tgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| ||| |||||||||||||    |||||||| |||||||||||||||||||| |||||| |||||  |||||||    
T  25617525 tgcagcttttggaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgcttttcttttggttatcat 25617604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 30937013 - 30937056
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  30937013 catttgatttggctttgtggtatttgggttctttggaatgaaag 30937056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 19232776 - 19232720
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||    
T  19232776 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttcctttt 19232720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 40969997 - 40969957
Alignment:
Q  48 ttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  40969997 ttgatttggctttgtggtatttgggttctttggaatgaaag 40969957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 14608772 - 14608819
Alignment:
Q  39 ttcttacatttgatttggctttgtagtatttggattctttggaatgaa 86  Q
    ||||||||  |||||||||| ||| |||||||||||||||||||||||    
T  14608772 ttcttacacatgatttggctatgttgtatttggattctttggaatgaa 14608819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 16896929 - 16896972
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||  ||||||||||||||||    
T  16896929 catttgatttggctttgtggtatttgagttctttggaatgaaag 16896972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 19232872 - 19232829
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    ||||||||||||||| || |||||||| ||||||||||||||||    
T  19232872 catttgatttggcttggtggtatttgggttctttggaatgaaag 19232829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 31644716 - 31644673
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| ||||| || ||||||||||||||||    
T  31644716 catttgatttggctttgtggtattcgggttctttggaatgaaag 31644673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 50029124 - 50029074
Alignment:
Q  156 tctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    |||||||| |||||||||| ||||||||| ||||||||||||  |||||||    
T  50029124 tctcttcgttggttgaaagttaaaaatgtgtgctttccttttggttatcat 50029074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 50543105 - 50543170
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||| | |||||| ||||| ||||||||    
T  50543105 aaggttaagattacatctctcaaatggttgaaagcaaaaaatatgtgcttttctttttattatcat 50543170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 16897025 - 16897136
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagc-taaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttg 239  Q
    ||||||||||||||||||||    |||||||||||  |||||||| ||||||||||||  ||   ||||| |||||||||| | ||| ||||  |||||     
T  16897025 aaggttaagattacatctctcaaatggttgaaagcaaaaaaatgtgtgctttccttttggtt---atcatttgtggtggcagcgtccccttgcttgttta 16897121  T
Q  240 gagattgactgatgt 254  Q
    | |||||||||||||    
T  16897122 gggattgactgatgt 16897136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 256
Target Start/End: Original strand, 25459378 - 25459586
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaagg 144  Q
    |||||| ||||||||||| |||||||| |||||||   |||||||||||||| ||  ||||||||||||| |||| ||| | |||| || ||| ||||||    
T  25459378 catttggtttggctttgttgtatttgggttctttgatctgaaaggaaccatagacattttgctaataaagtcaacacgaccgtgcatctattggaaaagg 25459477  T
Q  145 ttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagat 244  Q
    | |||||    |||||||| |||||||||||| ||||||| |||||||||||| |||   ||||||||||||||||  | || ||||  ||||||| |||    
T  25459478 tgaagatatattctcttcgatggttgaaagcttaaaatgtatgctttccttttgatt---atcatatgtggtggcagaacccccttgcttgtttggggat 25459574  T
Q  245 tgactgatgttt 256  Q
    ||| ||||||||    
T  25459575 tgagtgatgttt 25459586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 7446559 - 7446385
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagc 132  Q
    |||||||||||||||||||||||||| ||| | |||||| || ||||||||||||| || || | ||||||||| || ||||||||  ||||  ||||||    
T  7446559 cggtctttcttacatttgatttggctctgttgcatttgggttatttggaatgaaagaaatcaaagactctttgcgaacaaagccaatacgatggtgcagc 7446460  T
Q  133 tcttgaaaaaggttaa-gattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    | ||| |||| ||||| |||    |||||||| |||||||||||||||||| | ||||||||||||  |||||||    
T  7446459 ttttggaaaatgttaaagatgtattctcttcgttggttgaaagctaaaaatatgtgctttccttttggttatcat 7446385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 14528546 - 14528382
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagc 132  Q
    ||||||||  |||||||||||||||||||| ||| |||| |||||||||| ||||| || |||| ||| |||||||| || | ||| |||| |||||| |    
T  14528546 cggtcttttatacatttgatttggctttgttgtaattgggttctttggaacgaaagaaatcatatactttttgctaagaagggcaattcgaccttgcatc 14528447  T
Q  133 tcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    | ||| |||||||||||||  | || ||| | ||||||||| |||||||||| ||||| ||||||    
T  14528446 tgttggaaaaggttaagatatcctcgctttgatggttgaaatctaaaaatgtgtgcttccctttt 14528382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 32045394 - 32045558
Alignment:
Q  42 ttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaa 141  Q
    ||||||||||||||||||||| | |||||| || ||||||||||||| ||||| | ||| | ||| || ||||| || |||||  |||||||  || |||    
T  32045394 ttacatttgatttggctttgttgcatttgggttatttggaatgaaagaaaccaaagactttctgccaacaaagctaattcgatgatgcagcttctggaaa 32045493  T
Q  142 aggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    | ||||||||    ||||| || ||| |||||||||||||||| ||||||||||||  |||||||    
T  32045494 aagttaagatgtattctctccgctggctgaaagctaaaaatgtgtgctttccttttggttatcat 32045558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 10009541 - 10009704
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | |||||| || ||||||||||||| || || |  ||||||||| | ||||||||  || |  ||||||||| | ||||    
T  10009541 tacatttgatttggctatgttgcatttgggttatttggaatgaaagaaatcaaaggctctttgctcacaaagccaatacggtggtgcagctctaggaaaa 10009640  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| |    |||||||| |||||||||||||||||||| || |||||||||  |||||||    
T  10009641 ggttaagttgtattctcttcgttggttgaaagctaaaaatgtgtgttttccttttggttatcat 10009704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 5592217 - 5592413
Alignment:
Q  42 ttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaa 141  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||| |||| ||||  |||||  ||||||| |  || || ||  |||    | ||||||    
T  5592217 ttacatttgatttggctatgttgtatttgggttctttggaatgaacggaagcatatgctcttctctaataatgttaaatccattatgc----cctgaaaa 5592312  T
Q  142 aggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgga 241  Q
     |||||| |||||||| ||||| |||||||||||||||||||| || ||||| ||| | |   | ||| |||||||||| || | |||||| ||||||||    
T  5592313 tggttaaaattacatcccttcgatggttgaaagctaaaaatgtgtgatttccctttgact---accatttgtggtggcagcaacttcttgtttgtttgga 5592409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 48126153 - 48125957
Alignment:
Q  42 ttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaa 141  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||| |||| ||||  |||||  ||||||| |  || || ||  |||    | ||||||    
T  48126153 ttacatttgatttggctatgttgtatttgggttctttggaatgaacggaagcatatgctcttctctaataatgttaaatccattatgc----cctgaaaa 48126058  T
Q  142 aggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgga 241  Q
     |||||| |||||||| ||||| |||||||||||||||||||| || ||||| ||| | |   | ||| |||||||||| || | |||||| ||||||||    
T  48126057 tggttaaaattacatcccttcgatggttgaaagctaaaaatgtgtgatttccctttgact---accatttgtggtggcagcaacttcttgtttgtttgga 48125961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 8933072 - 8933133
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaacca 94  Q
    ||||||||| |||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  8933072 cggtctttcctacatttgatttggctttgtggtatttgggttctctggaatgaaagaaacca 8933133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 2398496 - 2398398
Alignment:
Q  156 tctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagattgactgatgtt 255  Q
    |||||||| |||||||||| ||||||||| || ||||||||||||||||||    | |||||| | |||||  |||||||||| | ||| ||||||||||    
T  2398496 tctcttcgatggttgaaagttaaaaatgtatgttttccttttaattatcatt---tatggtggtagcatccctttgtctgttttgggatagactgatgtt 2398400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 13840900 - 13840833
Alignment:
Q  139 aaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    |||||||| | ||||| ||||||||||||||||||||||||||  | |||||||||||| ||| ||||    
T  13840900 aaaaggtttaaattacttctcttcggtggttgaaagctaaaaacatgtgctttccttttgattctcat 13840833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 38654897 - 38654759
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | || ||  || |||||||||||||||| || | ||| ||||| || ||||||||  ||||  | || || ||| ||||    
T  38654897 tacatttgatttggctatgttgcatctgagttatttggaatgaaaggaatcaaagactttttgcaaacaaagccaatacgatggtacaactattggaaaa 38654798  T
Q  143 ggttaagattacat-ctcttcggtggttgaaagctaaaaa 181  Q
    ||||||| ||| || |||||||||||||||||||||||||    
T  38654797 ggttaag-ttatattctcttcggtggttgaaagctaaaaa 38654759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 38948231 - 38948274
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  38948231 catttgatttggctttgtggtatttgggttctttggaatgaaag 38948274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 53679467 - 53679510
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  53679467 catttgatttggctttgtggtatttgggttctttggaatgaaag 53679510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 17995327 - 17995281
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttg 79  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  17995327 cggtcattcttgcatttgatttggctttgttgtatttggattctttg 17995281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 19836822 - 19836717
Alignment:
Q  144 gttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggaga 243  Q
    |||||||||||||||||   |||||||||||| |||||||| |||||||| |||  ||   |||||||||||||||||| |||  |||  ||||||| ||    
T  19836822 gttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggtt---atcatatgtggtggcaacgtccctttgcttgtttgggga 19836726  T
Q  244 ttgactgat 252  Q
    ||| |||||    
T  19836725 ttggctgat 19836717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 8933185 - 8933300
Alignment:
Q  146 taagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagatt 245  Q
    |||||||||||| || || ||| | ||||| |||||| | ||||||||||||  ||||||   |||||||||||| ||||| ||| | ||||||| ||||    
T  8933185 taagattacatccctccgatggctaaaagcaaaaaatatgtgctttccttttggttatca---tatgtggtggcagcatccccttatttgtttggggatt 8933281  T
Q  246 gactgatgtttttattttt 264  Q
    |  |||||||||| |||||    
T  8933282 ggttgatgttttttttttt 8933300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 19310037 - 19310093
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    ||||||||||| | ||||||||  ||||||||||| |||||||| ||||||||||||    
T  19310037 aaggttaagatcatatctcttcaatggttgaaagcaaaaaatgtgtgctttcctttt 19310093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 38948327 - 38948437
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||||||||||    | ||||||||| |||||||| ||||||||||||  ||   ||||| |||||||||| ||||| ||||  ||||| |    
T  38948327 aaggttaagattacatctctcaaattgttgaaagcaaaaaatgtgtgctttccttttggtt---atcatttgtggtggcagcatccccttgcttgtttag 38948423  T
Q  241 agattgactgatgt 254  Q
      ||||||||||||    
T  38948424 gaattgactgatgt 38948437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 54037041 - 54037088
Alignment:
Q  205 atcatatgtggtggcaacatcctcttgtctgtttggagattgactgat 252  Q
    |||||||||||||||||| ||| ||||| ||||||| |||||||||||    
T  54037041 atcatatgtggtggcaacttccccttgtttgtttggggattgactgat 54037088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 19836918 - 19836872
Alignment:
Q  48 ttgatttggctttgtagtatttggattctttggaatgaaaggaacca 94  Q
    ||||||||||||||| |||||||| |||||| ||||||||| |||||    
T  19836918 ttgatttggctttgtggtatttgggttctttcgaatgaaagaaacca 19836872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 20248751 - 20248832
Alignment:
Q  150 attacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtct 234  Q
    ||||| ||||||| |||| |||||||||||||||| |  |||||||||  ||   | ||||||||||||||||| ||||||||||    
T  20248751 attacttctcttcagtggctgaaagctaaaaatgtctattttccttttggtt---accatatgtggtggcaacaacctcttgtct 20248832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 36188747 - 36188706
Alignment:
Q  165 tggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||||| |||||||||  |||||||    
T  36188747 tggttgaaagctaaaaatgtttgttttccttttggttatcat 36188706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 43470149 - 43470202
Alignment:
Q  35 gtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    ||||||| | |||||| ||||||||||| |||||||| |||||||||| |||||    
T  43470149 gtctttccttcatttggtttggctttgtggtatttgggttctttggaacgaaag 43470202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 53679563 - 53679619
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    ||||||||||||||||||||    ||||||||||| |||||||| |||||| |||||    
T  53679563 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtatgcttttctttt 53679619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 35368283 - 35368446
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | |||||| || |||||||||||||||| || | ||| ||||| || ||||||||  ||||  | || || ||| ||||    
T  35368283 tacatttgatttggctatgttgcatttgggttatttggaatgaaaggaatcaaagactttttgcgaacaaagccaatacgatggtacatcttttggaaaa 35368382  T
Q  143 ggttaagattacat-ctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| ||| || ||||||| |||||||||||||||||||| ||||||||||||  |||||||    
T  35368383 ggttaag-ttatattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcat 35368446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 32641626 - 32641496
Alignment:
Q  76 tttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaaggttaagat-tacatctcttcggtggttgaaag 174  Q
    ||||||||||||| || || | | ||||||  || ||||||||||||||  ||||||| ||| ||||||||||||| ||| |||||||| ||||||||||    
T  32641626 tttggaatgaaagaaatcaaagagtctttgagaacaaagccaactcgatgatgcagcttttggaaaaggttaagatgtac-tctcttcgttggttgaaag 32641528  T
Q  175 ctaaaaatgtttgctttccttttaattatcat 206  Q
    |||||||||| ||||||||||||  |||||||    
T  32641527 ctaaaaatgtgtgctttccttttggttatcat 32641496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 36193150 - 36193313
Alignment:
Q  43 tacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaa 142  Q
    |||||||||||||||| ||| | |||||| || ||||||||||||| || || | |||||||||| | ||||||||  || |  |||| |||||| ||||    
T  36193150 tacatttgatttggctctgttgcatttgggttatttggaatgaaagaaatcaaagactctttgctcacaaagccaatacggtggtgcaactcttggaaaa 36193249  T
Q  143 ggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| |    |||||||| |||||||||||||||||||| |||||| |||||  |||||||    
T  36193250 ggttaagttgttctctcttcgttggttgaaagctaaaaatgtgtgcttttcttttggttatcat 36193313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 31458959 - 31458880
Alignment:
Q  127 tgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||| ||| |||||||||||||    |||||||| |||||||||||||||||||| ||||||||||||  |||||||    
T  31458959 tgcagcttttggaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcat 31458880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 31071995 - 31071877
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagc 132  Q
    ||||| || |||||||||||||| |||||| |||||||| | |||||||| ||||| ||||| | ||| || ||||| |||||||| |||| | |||| |    
T  31071995 cggtcattattacatttgatttgcctttgttgtatttgggtcctttggaacgaaagaaaccagagacttttcgctaacaaagccaattcgaccgtgcaac 31071896  T
Q  133 tcttgaaaaaggttaagat 151  Q
    |  || |||||||||||||    
T  31071895 ttctggaaaaggttaagat 31071877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 10386267 - 10386310
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  10386267 catttgatttggctttgtggtatttgggttctttggaatgaaag 10386310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 22560145 - 22560300
Alignment:
Q  51 atttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaaggttaaga 150  Q
    |||||||| ||| |||||||| ||||||||| |||| |||||||||   | ||  | |||||||  || ||| | ||||||||  || ||||||| || |    
T  22560145 atttggctctgttgtatttgggttctttggagtgaacggaaccatatgttgttctccaataaagtaaaatcggttttgcagcttatggaaaaggtaaaaa 22560244  T
Q  151 ttacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    | || ||||||   | |||||||||||||||||||||||||||||||  |||||||    
T  22560245 tcacttctcttacctagttgaaagctaaaaatgtttgctttccttttggttatcat 22560300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 48433948 - 48433785
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagc 132  Q
    ||||| || ||||||||||||||||| ||| | |||||| || | ||||||||||| || || | ||||||||| || ||| ||||  |||   ||||||    
T  48433948 cggtcgtttttacatttgatttggctatgttgcatttgggttatatggaatgaaagaaatcaaagactctttgcgaacaaaaccaatacgacgatgcagc 48433849  T
Q  133 tcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttt 196  Q
    | ||| |||| ||||||||    |||||||| ||||||||||| |||||| | || ||||||||    
T  48433848 ttttggaaaatgttaagatgtattctcttcgttggttgaaagccaaaaatatgtgttttccttt 48433785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 24561539 - 24561589
Alignment:
Q  156 tctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    |||||||| |||||||||||||||||||| ||||||||||||  |||||||    
T  24561539 tctcttcgttggttgaaagctaaaaatgtgtgctttccttttggttatcat 24561589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 51128674 - 51128544
Alignment:
Q  76 tttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagc 175  Q
    ||||||||||||| || || | ||||||||| || ||||||||  |||   ||||| | ||| |||||||||||||    |||||||| ||||||||| |    
T  51128674 tttggaatgaaagaaatcaaagactctttgcgaacaaagccaatacgacggtgcagtttttggaaaaggttaagatgtattctcttcgttggttgaaaac 51128575  T
Q  176 taaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||| |||||| |||||  |||||||    
T  51128574 taaaaatgtgtgcttttcttttggttatcat 51128544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 10386363 - 10386428
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||  |||||||    
T  10386363 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcat 10386428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 6333081 - 6333191
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||| |||||||   ||||||||||  |||||||| ||||||||||||  ||   | |||||||||||||||| ||| |||   |||||||    
T  6333081 aaggttaagattatatctcttaaatggttgaaagaaaaaaatgtgtgctttccttttggtt---accatatgtggtggcaacgtccccttacttgtttgg 6333177  T
Q  241 agattgactgatgt 254  Q
     ||||| |||||||    
T  6333178 ggattggctgatgt 6333191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 20417613 - 20417679
Alignment:
Q  169 tgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgttt 238  Q
    ||||||||||||||||||| |||||||||| ||   | ||| ||| ||||||||| ||||||||||||||    
T  20417613 tgaaagctaaaaatgtttgttttccttttagtt---accatttgtagtggcaacaacctcttgtctgttt 20417679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 39495949 - 39495903
Alignment:
Q  49 tgatttggctttgtagtatttggattctttggaatgaaaggaaccat 95  Q
    |||||||||||||| ||||||||||| | ||| ||||||||||||||    
T  39495949 tgatttggctttgttgtatttggattttgtgggatgaaaggaaccat 39495903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 51169878 - 51169824
Alignment:
Q  34 ggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||| | |||||||||||||||||| |||||||| |  |||||||||||||    
T  51169878 ggtctttccttcatttgatttggctttgtggtatttgggtcgtttggaatgaaag 51169824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 50092496 - 50092459
Alignment:
Q  49 tgatttggctttgtagtatttggattctttggaatgaa 86  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  50092496 tgatttgactttgttgtatttggattctttggaatgaa 50092459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 39415861 - 39415833
Alignment:
Q  165 tggttgaaagctaaaaatgtttgctttcc 193  Q
    |||||||||||||||||||||||||||||    
T  39415861 tggttgaaagctaaaaatgtttgctttcc 39415833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 38891708 - 38891868
Alignment:
Q  34 ggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagct 133  Q
    ||||||||||||||||||||| ||| ||| | || ||| || ||||||||||||| || || | | ||||||| || ||||||||  |||   |||| ||    
T  38891708 ggtctttcttacatttgatttagctctgttgcatatgggttatttggaatgaaagaaatcaaagattctttgcgaacaaagccaatacgacggtgcaact 38891807  T
Q  134 cttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcct 194  Q
     ||| |||||||||||||    |||||||| |||||||||||||||||||| |||||||||    
T  38891808 tttggaaaaggttaagatgtattctcttcgttggttgaaagctaaaaatgtgtgctttcct 38891868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 24732830 - 24732720
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||| |||||||   ||||||||||| |||||||| ||||||||||||  ||   | |||||||||||||| | ||| ||||  |||||||    
T  24732830 aaggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttccttttggtt---accatatgtggtggcagcgtccccttgcttgtttgg 24732734  T
Q  241 agattgactgatgt 254  Q
    |||||| |||||||    
T  24732733 agattggctgatgt 24732720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 41692210 - 41692320
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||| |||||||   ||||||||||| |||||||| ||||||||||   ||  | |||||||||||||||| | ||| |||| ||||||||    
T  41692210 aaggttaagattatatctcttaaatggttgaaagcaaaaaatgtgtgctttcctt---atggttatcatatgtggtggcagcgtccccttgactgtttgg 41692306  T
Q  241 agattgactgatgt 254  Q
     ||||| |||||||    
T  41692307 ggattggctgatgt 41692320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 13403772 - 13403707
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| |||||||||||| ||||||||    
T  13403772 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttgattatcat 13403707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 43599179 - 43599114
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| || |||||||||| |||||||    
T  43599179 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgttttccttttagttatcat 43599114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 15045898 - 15045973
Alignment:
Q  169 tgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttggagattga 247  Q
    ||||||||||| ||||||| |||||||||| ||| |||    ||||||||||||| |||||| |||||||||| |||||    
T  15045898 tgaaagctaaacatgtttgttttccttttagttaccatt---tgtggtggcaacaacctcttatctgtttggacattga 15045973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 13403868 - 13403825
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||    
T  13403868 catttgatttgactttgtggtatttgggttctttggaatgaaag 13403825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 12230413 - 12230380
Alignment:
Q  164 gtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    |||||||||||| |||||||||||||||||||||    
T  12230413 gtggttgaaagcgaaaaatgtttgctttcctttt 12230380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 39295716 - 39295776
Alignment:
Q  34 ggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaacca 94  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  39295716 ggtcttttctacatttgatttggctttgtggtatttggattctttggaatgaaagaaacca 39295776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 45846157 - 45846247
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcga 123  Q
    ||||| || |||||||||||||| ||||||||||| ||| | |||||||| ||||| ||||| | ||| |||||||| |||||||| ||||    
T  45846157 cggtcattattacatttgatttgactttgtagtatctgggtcctttggaacgaaagaaaccaaagactttttgctaacaaagccaattcga 45846247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 4163825 - 4163782
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  4163825 catttgatttggctttgtggtatttgggttctttggaatgaaag 4163782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 34206116 - 34206073
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  34206116 catttgatttggctttgtggtatttgggttctttggaatgaaag 34206073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 39295823 - 39295937
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgtttgg 240  Q
    ||||||||||||| ||||||  | ||||||||| | |||||||| |||||| | |||  |||| ||   ||||||||||| ||||| ||| | |||||||    
T  39295823 aaggttaagattatatctctcagatggttgaaaacaaaaaatgtgtgcttttcatttggttattat---atgtggtggcagcatccccttatttgtttgg 39295919  T
Q  241 agattgactgatgttttt 258  Q
     |||||||||||||||||    
T  39295920 ggattgactgatgttttt 39295937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 43109258 - 43109301
Alignment:
Q  45 catttgatttggctttgtagtatttggattctttggaatgaaag 88  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  43109258 catttgatttggctttgtggtatttgggttctttggaatgaaag 43109301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 8606775 - 8606941
Alignment:
Q  31 gccggtctttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgca 130  Q
    |||| |||||| | ||| |||||||||| ||| |||||||  ||||||||| |||| |||||||||  |  ||  |||||||||  || ||| |  || |    
T  8606775 gccgttctttcctccatatgatttggctctgttgtatttgagttctttggagtgaacggaaccataggccgttctctaataaagttaaatcggttatgta 8606874  T
Q  131 gctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    |||  || ||||||| || ||||| ||||||   ||||||||||||||||||| |||||||||||||    
T  8606875 gcttgtggaaaaggtaaaaattacttctcttacctggttgaaagctaaaaatgcttgctttcctttt 8606941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 45459215 - 45459169
Alignment:
Q  48 ttgatttggctttgtagtatttggattctttggaatgaaaggaacca 94  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||    
T  45459215 ttgatttggctttgtggtatttgggttctttggaatgaaagaaacca 45459169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 4163729 - 4163664
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||  |||||||    
T  4163729 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcat 4163664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 34206020 - 34205955
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||  |||||||    
T  34206020 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcat 34205955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 43109354 - 43109419
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||    ||||||||||| |||||||| ||||||||||||  |||||||    
T  43109354 aaggttaagattacatctctcaaatggttgaaagcaaaaaatgtgtgctttccttttggttatcat 43109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 45459122 - 45459057
Alignment:
Q  141 aaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    ||||||||||||||||||||   |||||||||||| |||||||| |||||||| |||  |||||||    
T  45459122 aaggttaagattacatctctcaagtggttgaaagcaaaaaatgtgtgctttccatttggttatcat 45459057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 21431392 - 21431471
Alignment:
Q  156 tctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcatcatatgtggtggcaacatcctcttgtctgttt 238  Q
    |||||||| |||||||||||||||||||| |||||| |||||  ||   ||||| | |||||||||||||| ||||| |||||    
T  21431392 tctcttcgttggttgaaagctaaaaatgtgtgcttttcttttggtt---atcatttatggtggcaacatccccttgtttgttt 21431471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 32703157 - 32703089
Alignment:
Q  129 cagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    ||||| ||||||||||||||| ||   |||||||| ||||||||||||||||| || |||||| |||||    
T  32703157 cagctattgaaaaaggttaagctttattctcttcgttggttgaaagctaaaaaagtgtgcttttctttt 32703089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 13773033 - 13773103
Alignment:
Q  127 tgcagctcttgaaaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    ||||||| |||||||||||||| || | || ||||   ||| |||||||||| ||||||||||||||||||    
T  13773033 tgcagcttttgaaaaaggttaaaatcatatttcttaactggctgaaagctaagaatgtttgctttcctttt 13773103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 8246 - 8304
Alignment:
Q  139 aaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttcctttt 197  Q
    ||||||| |||||||| ||||||   |||||||||||||||||||||||||||||||||    
T  8246 aaaaggtcaagattacttctcttacctggttgaaagctaaaaatgtttgctttcctttt 8304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 5136 - 5302
Alignment:
Q  39 ttcttacatttgatttggctttgtagtatttggattctttggaatgaaaggaaccataaactctttgctaataaagccaactcgatcttgcagctcttga 138  Q
    |||||||| ||||| ||||||||| | |||||  || ||||||||||||| ||||| | ||| |||||||| |||| |||  |||   ||||| | ||      
T  5136 ttcttacagttgatatggctttgttgaatttgagttatttggaatgaaagaaacca-agactttttgctaacaaagacaatacgacggtgcagttattcg 5234  T
Q  139 aaaaggttaagattacatctcttcggtggttgaaagctaaaaatgtttgctttccttttaattatcat 206  Q
    |||| ||||||||    |||||||| |||||||||||||||||||| || |||||||||  |||||||    
T  5235 aaaaagttaagatgtgttctcttcgttggttgaaagctaaaaatgtatgttttccttttggttatcat 5302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 2685 - 2731
Alignment:
Q  33 cggtctttcttacatttgatttggctttgtagtatttggattctttg 79  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  2685 cggtcattcttgcatttgatttggctttgttgtatttggattctttg 2731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University