View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_28 (Length: 291)
Name: NF14912_low_28
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 157 - 268
Target Start/End: Original strand, 7158984 - 7159096
Alignment:
| Q |
157 |
cgatttttattattttctaaattaatgtaccaatttctccaaaatgtagggtttatctct-aaaaaattggtgtatttggtctagtaatccatttattgt |
255 |
Q |
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| T |
7158984 |
cgatctttattattttctaaattaatgtaccaatttctccaaaatgtagggtttatctctaaaaaaattggtgtatttggtctagtaatccatttattgt |
7159083 |
T |
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| Q |
256 |
agggtttatctct |
268 |
Q |
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||||||||||||| |
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| T |
7159084 |
agggtttatctct |
7159096 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 7158475 - 7158505
Alignment:
| Q |
235 |
gtctagtaatccatttattgtagggtttatc |
265 |
Q |
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| T |
7158475 |
gtctagtaatccatttattgtagggtttatc |
7158505 |
T |
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