View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_3 (Length: 630)
Name: NF14912_low_3
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 328 - 614
Target Start/End: Complemental strand, 29060821 - 29060534
Alignment:
| Q |
328 |
tctaatgtgatggttgtttgatctaatggtaattaaagttaccgaggattttattttgaaaatcaaaatgaattcaaatccccctccattttgttca-aa |
426 |
Q |
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| T |
29060821 |
tctaatgggatggttgtttgatctaatggtaattaaagttaccgaggattttattttgaaaatcaaaatgaattcaaatccccctccattttgttcagaa |
29060722 |
T |
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| Q |
427 |
ggtagttacgatgaaatggataactgcataagagaaaggacatatacataatagaaaagtttcatatgttgataacacacaaaaacagaaagtattttct |
526 |
Q |
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| T |
29060721 |
ggtagttacgatgaaatggataactgcataagagaaaggacatatacataatagaaaagtttcatatgttgataacacacaaaaacagaaagtattttct |
29060622 |
T |
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| Q |
527 |
caacttcatgaattgtaaattgaaacatggatacattaaaaggaaacgatctcgattttctttagaattgtttcctatcattacacat |
614 |
Q |
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| T |
29060621 |
caacttcatgaattgtaaattgaaacaggggtacattaaaatgaaacgatctcgattttctttagaattgtttcctatcattacacat |
29060534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 29061028 - 29060819
Alignment:
| Q |
17 |
atagcaagactctcgctcaagagttgtaacgttgcattcagagacatgcaatgacatgagtaatagcaaaccccctaactacatttccagtcgaactcat |
116 |
Q |
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| T |
29061028 |
atagcaagactctcgctcgagagttgtaacgttgcattcagagacatgcaaggacatgagtaatagcaaaccccctaaatacatttccagtcgaactcat |
29060929 |
T |
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| Q |
117 |
aaccattgttggattatgatacgttgtgttctacaatgaggatgatactattaggatcatgatatgctactctttaacactcaaatcagatgagctacct |
216 |
Q |
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| T |
29060928 |
aaccattgttgggttatgatacgttgtgttctacaatgaggttgttactattaatatcatgatatgctactctttaacactcaaatcagatgagctacct |
29060829 |
T |
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| Q |
217 |
aaccccctct |
226 |
Q |
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| T |
29060828 |
gaccccctct |
29060819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 28835885 - 28835813
Alignment:
| Q |
333 |
tgtgatggttgtttgatctaatggtaattaaagttaccgaggattttattttgaaaatcaaaatgaattcaaat |
406 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||| |||| |
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| T |
28835885 |
tgtgatgattgtttgatctaatggtaattaaagtcaccgagg-ttttattttgaaattcaaaataaattgaaat |
28835813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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