View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_30 (Length: 277)
Name: NF14912_low_30
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 10821530 - 10821796
Alignment:
| Q |
1 |
tacaactttacaagttcacctttgatgattcaactgatatatgtttaaaaagtcaatatatcataaactatgtaacaaataagaatcttgtcattttnnn |
100 |
Q |
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| T |
10821530 |
tacaactttacaagttcacctttgatgattcaactgatatatgtttaaaaagtcaatatatcataaactatgtaacaaataagaatcttgtaattttaaa |
10821629 |
T |
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| Q |
101 |
nnnnn--tagaaaagtcctatgcgcgaggcgcatgaggccatgcgtcgcgcgtgacaattgctcatctccttgatatctcatcagcatgcgctaggcgca |
198 |
Q |
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| T |
10821630 |
aaaaaaatagaaaagtcctatgcgcgaggcgcatgaggccatgcgtcgcgcgtgacagttgctcatctccttgatatctcatcagcacgcgctaggcgca |
10821729 |
T |
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| Q |
199 |
gaaagaaacacatgaggtgcatagcaaaccaaggatgagttgctaacgcattaatgaccatcatctg |
265 |
Q |
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| T |
10821730 |
gaaggaaacacatgaggtgcatagcaaaccaaggatgagttgctaacgcattaatgaccatcatctg |
10821796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 1629109 - 1628862
Alignment:
| Q |
5 |
actttacaagttcacctttgatgattcaactgatatatgtttaaaaagtcaatatatcataaactatgtaacaaataagaatcttgtcattttnnnnnnn |
104 |
Q |
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| T |
1629109 |
actttacaagttcaactttgatgatccagcggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcttgtcattttaaaaata |
1629010 |
T |
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| Q |
105 |
n---tagaa--aagtcctatgcgcgaggcgcatgaggccatgcgtcgcgcgtgacaattgctcatctccttgatatctcatcagcatgcgctaggcgcag |
199 |
Q |
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| T |
1629009 |
tatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctgtggcagttgctcatctccttgatctctcgacagcatgcgcgaggcgcag |
1628910 |
T |
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| Q |
200 |
aaagaaacacatgaggtgcatagcaaaccaaggatgagttgctaacgc |
247 |
Q |
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| T |
1628909 |
aaggaaacacttgaggtggacaccaaaccaatgagtagttgctaacgc |
1628862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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