View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_31 (Length: 272)
Name: NF14912_low_31
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 330453 - 330526
Alignment:
| Q |
24 |
tcatattttaaattcattgaataataaataaatgtatttgatatatagaccatatacatgagatgagagataat |
97 |
Q |
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| T |
330453 |
tcatattttaaattcattgaataataaataaatgtatttgatatatagaccatatacatgagatgagagataat |
330526 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 330523 - 330620
Alignment:
| Q |
162 |
taatgtataaatttgatattgtaaaaataatcaagttgtaaatgaagcagatccaatttggc---agcagacaaaagagattaagaatgaaaggaatg |
256 |
Q |
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| T |
330523 |
taatgtataaatttgacattgtaaaaataatcaagtcgtaaatgaagcagatctgatttggcagaagcagacacaagagattaagaatgaaaggaatg |
330620 |
T |
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