View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_36 (Length: 250)
Name: NF14912_low_36
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 46595161 - 46594936
Alignment:
| Q |
1 |
tttaacgttaaattaagtgaattttatattttgttgttatattgaacaaaacaatggtatttttgagaataaaa-gtggtaaaaagaacggaggctctgt |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46595161 |
tttaacgttaaattaagtgaattttgtattttgttgttatattgaacaaa-caatggtatttttgagaataaaaagtggtaaaaagaacggaggctctgt |
46595063 |
T |
|
| Q |
100 |
ttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46595062 |
ttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcact |
46594963 |
T |
|
| Q |
200 |
gtttttataatttgtttaccaatgtga |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
46594962 |
gtttttataatttgtttaccaatgtga |
46594936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 4435677 - 4435902
Alignment:
| Q |
1 |
tttaacgttaaattaagtgaattttatattttgttgttatattgaacaaaacaatggtatttttgagaataaaa-gtggtaaaaagaacggaggctctgt |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
4435677 |
tttaacgttaaattaagtgaattttgtattttgttgttatattgaacaaa-caatggtatttttgagaataaaaagtggtaaaaagaacggagactctgt |
4435775 |
T |
|
| Q |
100 |
ttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4435776 |
ttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcact |
4435875 |
T |
|
| Q |
200 |
gtttttataatttgtttaccaatgtga |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
4435876 |
gtttttataatttgtttaccaatgtga |
4435902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 4091898 - 4092123
Alignment:
| Q |
1 |
tttaacgttaaattaagtgaattttatattttgttgttatattgaacaaaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctg |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
4091898 |
tttaacgttaaattaagtgaattttgtattttgttgttatattgaacaaa-caatggtatttttgagaataaaaagtggtaaaaagaacggcaggctctg |
4091996 |
T |
|
| Q |
99 |
tttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcac |
198 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4091997 |
tttaattcaaccaaaattgttaagaatgttgaagctatgtattttgacaggtgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcac |
4092096 |
T |
|
| Q |
199 |
tgtttttataatttgtttaccaatgtg |
225 |
Q |
| |
|
|||||||| |||||||||||||||||| |
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|
| T |
4092097 |
tgtttttagaatttgtttaccaatgtg |
4092123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47521160 - 47521386
Alignment:
| Q |
1 |
tttaacgttaaattaagtgaattttatattttgttgttatattgaacaaaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctg |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||| |
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|
| T |
47521160 |
tttaacgttaaattaagtgaattttgtattttgttgttatattgaacaaa-caatggtatttttgagaataaaaagtggtaaaaagaacggcaggttctg |
47521258 |
T |
|
| Q |
99 |
tttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcac |
198 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
47521259 |
tttaattcaaccaaaattgttaagaatgttgaagctatgtattttgacaggtgcatttgtcaatgtagaatctcttttgtttaaacaggttgtatatcat |
47521358 |
T |
|
| Q |
199 |
tgtttttataatttgtttaccaatgtga |
226 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
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|
| T |
47521359 |
tgtttttagaatttgtttaccaatgtga |
47521386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 16961034 - 16960829
Alignment:
| Q |
1 |
tttaacgttaaattaagtgaattttatattttgttgttatattgaacaaaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctg |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||| |
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|
| T |
16961034 |
tttaacgttaaattaagtgaattttgtattttgttgttatattgaacaaa-caatggtatttttgagaataaaaagtggtaaaaagaatggcatgctctg |
16960936 |
T |
|
| Q |
99 |
tttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcac |
198 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
16960935 |
tttaattcaaccaaaattgttaagaatgttgaagctatgtattttgacaggtgcatttgtcaatgtagaatctcttttgttttaacaggttttatatcac |
16960836 |
T |
|
| Q |
199 |
tgttttt |
205 |
Q |
| |
|
||||||| |
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|
| T |
16960835 |
tgttttt |
16960829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 25868875 - 25869043
Alignment:
| Q |
1 |
tttaacgttaaattaagtgaattttatattttgttgttatattgaacaaaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctg |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||| |
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|
| T |
25868875 |
tttaacgttaaattaagtgaattttgtattttgttgttatattgaacaaa-caatggtatttttgagaataaaaagtggtaaaaagaactgcaggctctg |
25868973 |
T |
|
| Q |
99 |
tttagttcaaccaaaattgttcagaatgttgaagctatgtattttgacagatgcatttgtcaatgtagaa |
168 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
25868974 |
tttaattcaaccaaaattgttaagaatgttgaagctatgtattttgatagatgcatttgtcaatgtagaa |
25869043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 26496088 - 26496157
Alignment:
| Q |
148 |
gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgttta |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
26496088 |
gatgcatttgttgctgtagaatctcttttgttttaacaggttgtatatcactgtttttagaatttgttta |
26496157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 37719392 - 37719256
Alignment:
| Q |
91 |
aggctctgtttagttcaaccaaaattgttcagaatgttg-aagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggtt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37719392 |
aggctctgtttagttcaaccaaaattgttcagaatgttggaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggtt |
37719293 |
T |
|
| Q |
190 |
gtatatcactgtttttataatttgtttaccaatgtga |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719292 |
gtatatcactgtttttataatttgtttaccaatgtga |
37719256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30440631 - 30440559
Alignment:
| Q |
1 |
tttaacgttaaattaagtgaattttatattttgttgttatattgaacaaaacaatggtatttttgagaataaaa |
74 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||| ||||||||| |
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|
| T |
30440631 |
tttaacgttaaattaagtgaattttgtattttgttgttttattgaac-aaacaatggtgttttttagaataaaa |
30440559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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