View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_4 (Length: 594)
Name: NF14912_low_4
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 231 - 594
Target Start/End: Complemental strand, 39976435 - 39976072
Alignment:
| Q |
231 |
tagtacacatgttttaattaagttgatatgttatgtctaattccacctctccatgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaa |
330 |
Q |
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| T |
39976435 |
tagtacacatgttttaattaagttgatatgttatgtctaattccacctctccatgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaa |
39976336 |
T |
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| Q |
331 |
tagtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctac |
430 |
Q |
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| T |
39976335 |
tagtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctac |
39976236 |
T |
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| Q |
431 |
atgttcatgtggctaccaattggaattattttagcaatttatagaatccttcttggtattttcctaccttacaaattagcacttgaattgggagtttgga |
530 |
Q |
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| T |
39976235 |
atgttcatgtggctaccaattggaattattttagcaatttatagaatacttcttggtattttccttccttacaaattagcacttgaattaggagtttgga |
39976136 |
T |
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| Q |
531 |
gtggcatagatctaaaaatcaaaggcactatccctaaaaacacaaaaccaaacaaaggtgtttt |
594 |
Q |
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| T |
39976135 |
gtggcatagatctaaaaatcaaaggcactatccctaaaaaaacaaaaccaaacaaaggtgtttt |
39976072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 39976729 - 39976516
Alignment:
| Q |
9 |
acatcatcatcttttcatttccacttgcaaggtaagttttaaacaannnnnnnnnaaagggttggcaaattaaagatatctataaaacatttttgtgtat |
108 |
Q |
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| T |
39976729 |
acatcatcatcttttcatatccacttgcaaggtaagttttaaacaatttttttttaaagggttggcaaa-----gatatctataaaacttttttgtgtat |
39976635 |
T |
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| Q |
109 |
tttctgatgtacattattatttttctaactactgggtctaacgcaagtagttgatgcataaaatgtgtgggtgatgtaaacttattgagttcgatttcaa |
208 |
Q |
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| T |
39976634 |
tttctgatgtacattattattttt-taactaccgggtctaacgcaagtagttgatgcataaaatgtgtgggtgatgtaaacttattgagttcgatttcaa |
39976536 |
T |
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| Q |
209 |
tgaacgaaaaaacattatta |
228 |
Q |
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| T |
39976535 |
tgaacgaaaaaacattatta |
39976516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 283 - 556
Target Start/End: Original strand, 28538296 - 28538563
Alignment:
| Q |
283 |
atgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaatagtccaaattcaatcatgccaagggacaaatatccaaagccattaatattt |
382 |
Q |
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| T |
28538296 |
atgattatgacaggaagcttatgtgatgaacaatgaaggaaaaaa---tagtcaaaactcagtgatgccaagg-agaaatatccaaagccattagtattt |
28538391 |
T |
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| Q |
383 |
catgatggaagattagcattcttgccaacaccattagcaacactctacatgttcatgtggctaccaattggaattattttagcaatttatagaatccttc |
482 |
Q |
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| T |
28538392 |
catggtg--agactagcattcttgcctacaccctcagcaactttctgcatgttcgtgtggattccaattggaattacttttgccatttatagaacccttc |
28538489 |
T |
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| Q |
483 |
ttggtattttcctaccttacaaattagcacttgaattgggagtttggagtggcatagatctaaaaatcaaaggc |
556 |
Q |
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| T |
28538490 |
ttggtaatttccttccttacaaatgggcccttgcattaggagtttgaagtggtacagatttgaatatcaaaggc |
28538563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 333 - 444
Target Start/End: Complemental strand, 16148123 - 16148012
Alignment:
| Q |
333 |
gtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctacat |
432 |
Q |
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|||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| || || ||||| | | |||| |||||||| |
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| T |
16148123 |
gtccaagttcaatcatgccaaaggaaaagtatccaaagccattaatatttcatgatggaagactagcatttttccctacaccttcatcaactctctacat |
16148024 |
T |
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| Q |
433 |
gttcatgtggct |
444 |
Q |
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| T |
16148023 |
gttcatgtggct |
16148012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 16194826 - 16194942
Alignment:
| Q |
341 |
tcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctacatgttcatgt |
440 |
Q |
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| T |
16194826 |
tcaattatgccaagggaaaagtatccaaagccattaatatttcatgatggcaggctagcattcttccctacaccttcatcaactctctacatgttcatgt |
16194925 |
T |
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| Q |
441 |
ggctaccaattggaatt |
457 |
Q |
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|||| ||||| |||||| |
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| T |
16194926 |
ggcttccaatgggaatt |
16194942 |
T |
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