View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_40 (Length: 246)
Name: NF14912_low_40
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40868475 - 40868248
Alignment:
| Q |
1 |
ctcgccacgactgacatataatgtcatttttggcttgaacatataatatattaacataaaacttttgataaaattataataaatctgtatagcttatgtt |
100 |
Q |
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| T |
40868475 |
ctcgccacgactgacatataatgtcatttttggcttgaacatatatcatattaacataaaacttttgataaaattataataaatttgtatagcttatgtt |
40868376 |
T |
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| Q |
101 |
aatgacatttttaatctatgtgccatgattgcgattgggataaatagtccttccaaactcattagaaaaacggtatgacgtattcagatgtcatacactt |
200 |
Q |
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| T |
40868375 |
aatgacatttttaatctatgtgccctgattgcgattgggataaatagtccttccaaactcattagaaaaacagtatgaagtattcagatgtcatacactt |
40868276 |
T |
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| Q |
201 |
tgccacgattgacgcgtagtgtcacttg |
228 |
Q |
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| T |
40868275 |
tgccacgattgacgcgtagtgtcccttg |
40868248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 40868833 - 40868737
Alignment:
| Q |
50 |
attaacataaaacttttgataaaattataataaatctgtatagcttatgttaatgacatttttaatctatgtgccatgattgcgattgggataaata |
146 |
Q |
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| T |
40868833 |
attaacataaaactttggataaaattataattaatttgtgcagtttatgttaatggtatttttaatccatgtgccatggttgcgattgggctaaata |
40868737 |
T |
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