View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_43 (Length: 237)
Name: NF14912_low_43
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 7739394 - 7739559
Alignment:
| Q |
58 |
aattcctcatatcttaactactagtcgaatagtcgtatactcatgttggtgaatagtggtaagttatgttggtgaaaactagtgttcaccaactagtcgt |
157 |
Q |
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| T |
7739394 |
aattcctcatatcttaactactagtcgaatagtggtatcctcatgttggtgaatagtggtaagttatgttggtgaaaactagtgttcaccaactagtcgt |
7739493 |
T |
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| Q |
158 |
atactccattaactagaaataatgttggtgaatagactagtaataaaataatgttggtgaatagtg |
223 |
Q |
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| T |
7739494 |
atactccattaactagtaataatgttggtgaatagactagtaataaaataatgttggtgaatagtg |
7739559 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7739367 - 7739401
Alignment:
| Q |
1 |
aaactgagagatataattagatgaagtaattcctc |
35 |
Q |
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| T |
7739367 |
aaactgagatatataattagatgaagtaattcctc |
7739401 |
T |
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