View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_47 (Length: 210)
Name: NF14912_low_47
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 41039195 - 41039372
Alignment:
| Q |
18 |
atatttagctattcatcatttgttcataaataaacaa-gacaattgaatcataaatatctaaccaaagacaagaaaagtaaactacaataaaatagatgg |
116 |
Q |
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| T |
41039195 |
atatttagctattcatcatttgttcataaataaacaaagacaattgaatcataaatatctaaccaaagacaagaaaagtaaactacaataaaatagatgg |
41039294 |
T |
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| Q |
117 |
tacgttggcaagccatccatcattatttatgaaagatgacaaagtatattcattcaagtttaagctatctggtttctt |
194 |
Q |
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| T |
41039295 |
tacgttggcaagccatccatcattatttatgaaagatgacaaagtatattcattcaagtttaagctatctggtttctt |
41039372 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 18745566 - 18745523
Alignment:
| Q |
124 |
gcaagccatccatcattatttatgaaagatgacaaagtatattc |
167 |
Q |
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| T |
18745566 |
gcaagccatccatctttatttatgaaagatgataaagaatattc |
18745523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 54497759 - 54497809
Alignment:
| Q |
120 |
gttggcaagccatccatcattatttatgaaagatgacaaagtatattcatt |
170 |
Q |
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| T |
54497759 |
gttggtaagccatccattcttatttatgaaagatgataaagaatattcatt |
54497809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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