View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_48 (Length: 204)
Name: NF14912_low_48
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 39578587 - 39578758
Alignment:
| Q |
23 |
ataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagaccaacaaccattaactaaggggcgaaacagggacaaaaca |
122 |
Q |
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| T |
39578587 |
ataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagaccaacaaccattaactaaggggggaaacagggacaaaaca |
39578686 |
T |
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| Q |
123 |
gagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgatattcttcg |
194 |
Q |
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| T |
39578687 |
gagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgattttcttcg |
39578758 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 39542302 - 39542382
Alignment:
| Q |
106 |
gaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgat |
186 |
Q |
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| T |
39542302 |
gaaacaaggacaaaacagagaaatgaggtattgaaaaaacagctcatggagacacttgcgtgttgattgttgtaccttgat |
39542382 |
T |
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