View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_49 (Length: 204)
Name: NF14912_low_49
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_49 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 39578928 - 39578735
Alignment:
| Q |
11 |
cagagagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtgg |
110 |
Q |
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| T |
39578928 |
cagagagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtgg |
39578829 |
T |
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| Q |
111 |
atggcacgtctactgggagggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaat |
204 |
Q |
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| T |
39578828 |
atggcacgtctactgggagggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaat |
39578735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 39542561 - 39542367
Alignment:
| Q |
10 |
gcagagagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtg |
109 |
Q |
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| T |
39542561 |
gcagagagaaccacacagggatagttctagcagtgcttttgcgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtg |
39542462 |
T |
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| Q |
110 |
gatggcacgtctactgggagggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaat |
204 |
Q |
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| T |
39542461 |
gatggcacgtctactgggagggttgatgaatctgaaagtgcagcgctgatgatgctagacagaatttcatgcgatgcaaatcaaggtacaacaat |
39542367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 39574395 - 39574202
Alignment:
| Q |
11 |
cagagagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtgg |
110 |
Q |
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| T |
39574395 |
cagagagaaccgcatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtgg |
39574296 |
T |
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| Q |
111 |
atggcacgtctactgggagggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaat |
204 |
Q |
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| T |
39574295 |
atggcacgtctactgggaggattgatgaatctgaaagtgcaacattgatgatgctagatagactttcatgcgaagcaaatcaaggcacaacaat |
39574202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 39516545 - 39516437
Alignment:
| Q |
14 |
agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatg |
113 |
Q |
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|||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||| ||||| ||||| |
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| T |
39516545 |
agagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatg |
39516446 |
T |
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| Q |
114 |
gcacgtcta |
122 |
Q |
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|||||||| |
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| T |
39516445 |
acacgtcta |
39516437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 39509477 - 39509378
Alignment:
| Q |
14 |
agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatg |
113 |
Q |
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|||||||| |||||||||||||||| |||||||| || |||| |||||||||| ||||||| ||||||||||||||| ||| |||| ||||||||||| |
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| T |
39509477 |
agagaacctcatgaggatagttctaacagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatg |
39509378 |
T |
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