View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_50 (Length: 203)
Name: NF14912_low_50
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 29244652 - 29244478
Alignment:
| Q |
13 |
agattattcttccttactaatgatcacaaccttcatggactcaactctcaagctacgattataatataattattagtcctatcaaaaagacatattggaa |
112 |
Q |
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| T |
29244652 |
agatcattcttacttactaatgatcaccatcttcatggactcaactctaaagctacgattataatataattattagtcctatcaaaaagacatattggaa |
29244553 |
T |
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| Q |
113 |
ttattttaattagttaaagtctcatgcaattgattccaatatatacacatggatcatgaaattgacgtatatata |
187 |
Q |
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| T |
29244552 |
ttattttaattagttaaagtctcatgcaattgattccaatatatacacatggctcatgaaattgatgtatatata |
29244478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 29268421 - 29268392
Alignment:
| Q |
85 |
ttagtcctatcaaaaagacatattggaatt |
114 |
Q |
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| T |
29268421 |
ttagtcctatcaaaaagacatattggaatt |
29268392 |
T |
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