View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14912_low_8 (Length: 480)
Name: NF14912_low_8
Description: NF14912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14912_low_8 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Original strand, 175719 - 176166
Alignment:
| Q |
12 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaa-ccatcgatgacagattcg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
175719 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaaaccatcgatgacagattcg |
175818 |
T |
|
| Q |
111 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatattgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
175819 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatattgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
175918 |
T |
|
| Q |
211 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaatatttcaaaatgaaatttacaaaactcaagttaag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
175919 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaa---ttcaaaatgatgtttacaaaactcaagttaag |
176015 |
T |
|
| Q |
311 |
gctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggca |
410 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176016 |
gttcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggca |
176115 |
T |
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| Q |
411 |
gcgttcattgggccattgaagatcaaaataaccgattcctaaaatcacaag |
461 |
Q |
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| T |
176116 |
gcgttcattgggccattgaagatcaaaataaccgattcctaaaatcacaag |
176166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 441
Target Start/End: Complemental strand, 7565106 - 7564960
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggc |
394 |
Q |
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||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||||||| || || |||| |||| ||||| |||||| |
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| T |
7565106 |
caaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctgaaggacgtgttggg |
7565007 |
T |
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| Q |
395 |
aaatttgtaagtggcagcgttcattgggccattgaagatcaaaataa |
441 |
Q |
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||||||||||||||| | ||||||||| ||| |||||||| |||| |
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| T |
7565006 |
aaatttgtaagtggcgccattcattgggtcataaaagatcaagataa |
7564960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 385
Target Start/End: Complemental strand, 1471278 - 1471188
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaaggg |
385 |
Q |
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|||||||| |||||||| ||| |||||||| | ||| | |||||||| ||||| |||||||||||| || ||||||||| |||||||||| |
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| T |
1471278 |
caaaactctagttaaggttcatactttaggtaacaatttttggagaacgattcaagacttcccttctcagctcatgggtcaacccgaaggg |
1471188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 436
Target Start/End: Original strand, 55419478 - 55419619
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggc |
394 |
Q |
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|||||||||||||| |||||| |||||||| ||||||| ||||| |||||| |||||||||||||| || ||| |||| | ||||||| | | || |
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| T |
55419478 |
caaaactcaagttagggctcatactttaggtaccaacttttggaaaaggataccagacttcccttctgaaatcacgggtttgcccgaagagtgtccgggg |
55419577 |
T |
|
| Q |
395 |
aaatttgtaagtggcagcgttcattgggccattgaagatcaa |
436 |
Q |
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| T |
55419578 |
aaatttgtaagtggcaccattaattgggccatagaagatcaa |
55419619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 438
Target Start/End: Original strand, 3926760 - 3926898
Alignment:
| Q |
300 |
ctcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatt |
399 |
Q |
| |
|
||||||||| || ||| ||| |||| ||||| | |||||| ||||||||| |||||||||| | |||||||| ||||| | ||| ||||||| ||||| |
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| T |
3926760 |
ctcaagttagggttcatactctaggtaccaatttttggaggaggattccaaacttcccttcaaatatcatgggtttacccaatgggtatgttgggaaatt |
3926859 |
T |
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| Q |
400 |
tgtaagtggcagcgttcattgggccattgaagatcaaaa |
438 |
Q |
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| T |
3926860 |
tgtaagtggcacaattaattgggccatagaaaatcaaaa |
3926898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 1421520 - 1421453
Alignment:
| Q |
292 |
ttacaaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
360 |
Q |
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|
|||||||||||||||| | | ||| ||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
1421520 |
ttacaaaactcaagttgaagttcatacttt-ggcaccaactcttggagaaggattaaggacttcccttc |
1421453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 40724 - 40659
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
360 |
Q |
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||||||||||||||| | ||| ||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
40724 |
caaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattgaagacttcccttc |
40659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 24233753 - 24233688
Alignment:
| Q |
295 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
360 |
Q |
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||||||||||||||| | ||| || ||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
24233753 |
caaaactcaagttaaagttcatacattaggtaccgactcttggagaaggattaaggacttcccttc |
24233688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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