View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_high_12 (Length: 358)
Name: NF14913_high_12
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 345
Target Start/End: Complemental strand, 3499040 - 3498704
Alignment:
| Q |
9 |
aagcatagggatgtacgtgtatgatttctctttttatatttgagatgaaggctgatgccatattattcaactgtcttagtgactggctgatgccatatta |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3499040 |
aagcatagggatgtacgtgtatgatttctctttttatatttgagatgaaggctgatgccatattattcagctgtcttagtgactggctgatgccatatta |
3498941 |
T |
|
| Q |
109 |
ttcaaatctcataccatgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnn |
208 |
Q |
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||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3498940 |
ttcaaatctcatatcatgatgctggttgcgacatttatgactgaactttaaattagaattatgttatccactctttgtctttaatatctgattgtttttt |
3498841 |
T |
|
| Q |
209 |
nnnnnnnnnnnnnnctaattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgtt |
308 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498840 |
gtgtttttccttttctaattaaattgtaagatgcttgtgtgtttgacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgtt |
3498741 |
T |
|
| Q |
309 |
ctgtatcacaatcaggaaaggttcaacttcattggtc |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3498740 |
ctgtatcacaatcaggaaaggttcaacttcattggtc |
3498704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 226 - 345
Target Start/End: Complemental strand, 3510977 - 3510862
Alignment:
| Q |
226 |
attaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcagga |
325 |
Q |
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| T |
3510977 |
attaaattgtaagatgcttgtgt--ctgacaattatagttgttttgatttcagctagatggcccaa--ttttctgtgtctgttctgtattacaatcagga |
3510882 |
T |
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| Q |
326 |
aaggttcaacttcattggtc |
345 |
Q |
| |
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|||||||||||||||||| |
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| T |
3510881 |
tcggttcaacttcattggtc |
3510862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 3511103 - 3511057
Alignment:
| Q |
142 |
tttatgactgaactttaaattagaattatgttatccactatttgtct |
188 |
Q |
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|||||||| ||| ||||||||||||||||||||||| || ||||||| |
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| T |
3511103 |
tttatgacagaattttaaattagaattatgttatcctctttttgtct |
3511057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 124 - 344
Target Start/End: Original strand, 2354297 - 2354516
Alignment:
| Q |
124 |
atgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnnnnnnnnnnnnnnnnc |
223 |
Q |
| |
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|||||| ||| || ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||| | |
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| T |
2354297 |
atgatgctggctgcgacatttatgactgaactttaaattagaattatgttatctagtctttgtctttaatatctaattgctttttgtgttttcccttt-c |
2354395 |
T |
|
| Q |
224 |
taattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcag |
323 |
Q |
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|
||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
2354396 |
taattaaattgtaagatgcttgtatgtgcgtgacttataattgttttgatttcagctagatggcccaattttctctgtgtctgttctgtattacaatcag |
2354495 |
T |
|
| Q |
324 |
gaaaggttcaacttcattggt |
344 |
Q |
| |
|
|| ||||||||||||||||| |
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| T |
2354496 |
gatcggttcaacttcattggt |
2354516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 124 - 345
Target Start/End: Complemental strand, 2354969 - 2354749
Alignment:
| Q |
124 |
atgatgttggttgtgacatttatgactgaactttaaattagaattatgttatccactatttgtctttaatatctgattgnnnnnnnnnnnnnnnnnnnnc |
223 |
Q |
| |
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|||||| |||| | ||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||| || | |
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| T |
2354969 |
atgatgatggtcgcgacatttatgactgaactttaaattagaaatatgttatccagtctttgtctttagtatctgactgcttcttgtgttttcccttt-c |
2354871 |
T |
|
| Q |
224 |
taattaaattgtaagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcag |
323 |
Q |
| |
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|||||| | ||||||||||||||||||| ||||||||| || |||||||||||| || | ||||||| ||||| |||||||||||||||| |||||||| |
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| T |
2354870 |
taattatttagtaagatgcttgtgtgtctgacacttataattattttgatttcagataaaaggcccaattttctttgtgtctgttctgtattacaatcag |
2354771 |
T |
|
| Q |
324 |
gaaaggttcaacttcattggtc |
345 |
Q |
| |
|
|| |||||||||||||||||| |
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| T |
2354770 |
gatcggttcaacttcattggtc |
2354749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 2355119 - 2355045
Alignment:
| Q |
29 |
atgatttctctttttatatttgagatgaaggctgatgccatattattcaactgtcttagtgactggctgatgcca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
2355119 |
atgatttctctttttatatttgagatgaatgttgatgccatattattcaactgtcttagtgattggccgatgcca |
2355045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 2354145 - 2354222
Alignment:
| Q |
29 |
atgatttctctttttatatttgagatgaaggctgatgcca---tattattcaactgtcttagtgactggctgatgcca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| | |||||||||||| |
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| T |
2354145 |
atgatttctctttttatatttgagatgaaggctgatgccatattattattcagctttcttagttattggctgatgcca |
2354222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 31951329 - 31951428
Alignment:
| Q |
243 |
ttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcaggaaaggttcaacttcattg |
342 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
31951329 |
ttgtgtgtctgacacttatagttgttttgatttcagctagatggcccaattttctctgtgtctgttctgtattacaatcaggatcggttcaacttcattg |
31951428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 31951279 - 31951169
Alignment:
| Q |
235 |
taagatgcttgtgtgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtatcacaatcaggaaaggttcaa |
334 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | |||||||| ||||||| |
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| T |
31951279 |
taagatgcttatgtgtctgacacttatagttgttttgatttcagctagatgacccaattttctttgtgtctgttctgtattataatcaggattggttcaa |
31951180 |
T |
|
| Q |
335 |
cttcattggtc |
345 |
Q |
| |
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||||||||||| |
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| T |
31951179 |
cttcattggtc |
31951169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 22925838 - 22925904
Alignment:
| Q |
248 |
tgtctaacacttatagttgttttgatttcagctagatggcccaagtttctctgtgtctgttctgtat |
314 |
Q |
| |
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|||||||||||| | ||| ||||||||||| |||||||||| | ||||| ||||||| |||||||| |
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| T |
22925838 |
tgtctaacacttgcaattgctttgatttcagttagatggcccgattttctttgtgtctcttctgtat |
22925904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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