View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_high_15 (Length: 349)
Name: NF14913_high_15
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 22619938 - 22619600
Alignment:
| Q |
1 |
tgttcagaaagctgcgacattttcgtggttacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaacgctaagtgaggt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22619938 |
tgttcagaaagctgcgacatttttgtggttacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaacgctaagtgaggt |
22619839 |
T |
|
| Q |
101 |
ggaaatagatagcaattatgaggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22619838 |
ggaaatagatagcaattatgaggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaa |
22619739 |
T |
|
| Q |
201 |
catggaagcgctttatcttccgtattgaatgagctgcgacacttggagaaactacgcattgggaaaaaatttggatactactctgtttatgttcatgatg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22619738 |
catggaagcgctttatcttccgtattgaatgagctgcgacacttggagaaactacgcattgggaaaaaatttggatactactctgtttatgttcatgatg |
22619639 |
T |
|
| Q |
301 |
ttattgattttcatttggtttcatcccctcctatgcttc |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22619638 |
ttattgattttcatttggtttcatcccctcctatgcttc |
22619600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 255
Target Start/End: Complemental strand, 22647109 - 22646972
Alignment:
| Q |
118 |
atgaggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatc |
217 |
Q |
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|||||||||||||||||||| | | ||| | | ||| ||| | ||||||||||||||||||||| | | || ||||| ||||| ||||| ||||| |
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| T |
22647109 |
atgaggatggaatagagttattgagagagctcgaaaatctgaagaagttaaggaaattgggtttggataatattcagagagagcatgggagcgcgttatc |
22647010 |
T |
|
| Q |
218 |
ttccgtattgaatgagctgcgacacttggagaaactac |
255 |
Q |
| |
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|||| ||||||| ||| |||| |||||||||||||||| |
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| T |
22647009 |
ttccttattgaaggagttgcggcacttggagaaactac |
22646972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 22614183 - 22614080
Alignment:
| Q |
152 |
aaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgtattgaatgagctgcgacacttggagaaa |
251 |
Q |
| |
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|||||||| ||||||||| |||| || |||||| || |||||||||| |||||||| | | ||||||| || | |||||| ||| ||||||||||||| |
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| T |
22614183 |
aaagttgaagcagttaagagaattaggcttggttcgtcttagaagagagcatggaagtgttctatcttctttagtcaatgagatgcaacacttggagaaa |
22614084 |
T |
|
| Q |
252 |
ctac |
255 |
Q |
| |
|
|||| |
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|
| T |
22614083 |
ctac |
22614080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 34990789 - 34990925
Alignment:
| Q |
125 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
224 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||| ||||||||| ||| | ||| || ||| || | |||| |||||||||||||||| | |
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| T |
34990789 |
tggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgaatgatgtgagggcaagacattcaagcgctttatcttcctca |
34990888 |
T |
|
| Q |
225 |
ttgaatgagctgcgacacttggagaaactacgcattg |
261 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |
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| T |
34990889 |
ctgaatgagatgcgacacttggagaaattacgcattg |
34990925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 2304412 - 2304277
Alignment:
| Q |
125 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
224 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | |||||||||||||| || | ||| ||| ||| || ||||||| || ||||||||||||| |
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| T |
2304412 |
tggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcg |
2304313 |
T |
|
| Q |
225 |
ttgaatgagctgcgacacttggagaaactacgcatt |
260 |
Q |
| |
|
||||||||| ||||||||| ||||||| || ||||| |
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| T |
2304312 |
ttgaatgagatgcgacactcggagaaattatgcatt |
2304277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 34976909 - 34976960
Alignment:
| Q |
121 |
aggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaa |
172 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
34976909 |
aggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaa |
34976960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 2304498 - 2304440
Alignment:
| Q |
30 |
tacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaac |
88 |
Q |
| |
|
||||| |||| ||||||||||||||||| | |||||||||||||||||| |||||||| |
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| T |
2304498 |
tacaatatctgtttgtttcaattgaaggatgttataggaggcatggaatctctacaaac |
2304440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 34983960 - 34984096
Alignment:
| Q |
125 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
224 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | || ||||||||||| ||| ||| || || || ||||||| ||||||||||||||| | |
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| T |
34983960 |
tggaatagagttaattaaagagttgggaaagctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctca |
34984059 |
T |
|
| Q |
225 |
ttgaatgagctgcgacacttggagaaactacgcattg |
261 |
Q |
| |
|
||||||||| |||||||||| || ||| || |||||| |
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| T |
34984060 |
ttgaatgagatgcgacacttagaaaaattatgcattg |
34984096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 34983886 - 34983932
Alignment:
| Q |
42 |
ttgtttcaattgaagggttgtataggaggcatggaatcgctacaaac |
88 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||||| |
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|
| T |
34983886 |
ttgtttcaattgaaggatgttataggaggcatggaatctctacaaac |
34983932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 40581470 - 40581590
Alignment:
| Q |
125 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
224 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| | |||||||||||||| ||| ||| || || || ||||||| ||||||||||||||| | |
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| T |
40581470 |
tggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaacttgttttatgcgagggcagaacattttagcgctttatcttcctca |
40581569 |
T |
|
| Q |
225 |
ttgaatgagctgcgacacttg |
245 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
40581570 |
ttgaatgagatgcgacacttg |
40581590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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