View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_high_18 (Length: 332)

Name: NF14913_high_18
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_high_18
NF14913_high_18
[»] chr3 (1 HSPs)
chr3 (16-306)||(53817531-53817821)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 53817821 - 53817531
Alignment:
Q  16 atcaatatccttcaatgaaggtaaaatattaagcgcatcacttggcaacagtcaaagaaatgtccattggaaattctcttaagaaagacaatgaatagga 115  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53817821 atcaatatccttcaatgaaggtaaactattaagcgaatcacttggcaacagtcaaagaaatgtccattggaaattctcttaagaaagacaatgaatagga 53817722  T
Q  116 tctatgtagtatccattcttatatttgcagttccaacaaatacacaaactcatatcggcagtttaactaaaataaattactaactaacaaaaaggaagta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53817721 tctatgtagtatccattcttatatttgcagttccaacaaatacacaaactcatatcggcagtttaactaaaataaattactaactaacaaaaaggaagta 53817622  T
Q  216 gaacactctatcttttaataagtttagatagatttattttagcataaacctctctttcnnnnnnnnttctagcacaaacctcatatactaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||    
T  53817621 gaacactctatcttttaataagtttagatagatttattttagcataaacctctctttcaaaaaatattctagcacaaacctcatgtactaa 53817531  T

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