View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_high_19 (Length: 325)
Name: NF14913_high_19
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_high_19 |
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| [»] scaffold0097 (3 HSPs) |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 34641374 - 34641228
Alignment:
| Q |
1 |
attttaatctgtttcttcatagttgaatctcaagccacgtcttatccttgagcatgat---cataagctgctgcaatgtgcttccttcgaaaaccattat |
97 |
Q |
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| T |
34641374 |
attttaatttgtttcttcatagttgaatctcaagccacgtcttatccttgagcatgatgatcataagctgctgcaatgtgcttccttcgaaaaccattat |
34641275 |
T |
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| Q |
98 |
tctcctgtttatgaggctacctctacttccccttaatctttcaattc |
144 |
Q |
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| T |
34641274 |
tctcctgtttatgagtctacctctacttccccttaatcttccaattc |
34641228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 34641192 - 34641083
Alignment:
| Q |
136 |
tttcaattctcaaatccatggctttgtaacttgaaattcatctgaatctaaaatttccctttagtgttttgtttgatgagttaaatctgttcaagttaat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34641192 |
tttcaattctcaaatccatggctttgtaacttgaaattcatctgaatctaaaatttccctttagtgttttgtttgatgagttaaatttgttcaagttaat |
34641093 |
T |
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| Q |
236 |
ttactccaac |
245 |
Q |
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|||||||||| |
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| T |
34641092 |
ttactccaac |
34641083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34634399 - 34634340
Alignment:
| Q |
1 |
attttaatctgtttcttcatagttgaatctcaagccacgtcttatccttgagcatgatca |
60 |
Q |
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| T |
34634399 |
attttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatca |
34634340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 34641056 - 34641019
Alignment:
| Q |
272 |
cttctttcaaatattagaacagaaggagaggtttttat |
309 |
Q |
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| T |
34641056 |
cttctttcaaatattagaacagaaggagaggtttttat |
34641019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 35380 - 35294
Alignment:
| Q |
58 |
tcataagctgctgcaatgtgcttccttcgaaaaccattattctcctgtttatgaggctacctctacttccccttaatctttcaattc |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |
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| T |
35380 |
tcataagctgctgcaatgtgcttccttcgaaaaccattattctcctatttatgaagctacctctacttccccttaatcttccaattc |
35294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 35259 - 35203
Alignment:
| Q |
136 |
tttcaattctcaaatccatggctttgtaacttgaaattcatctgaatctaaaatttc |
192 |
Q |
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| T |
35259 |
tttcaattctcaaatccatggctttgtaacttgaaattcatctgaatctacaatttc |
35203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 35128 - 35092
Alignment:
| Q |
273 |
ttctttcaaatattagaacagaaggagaggtttttat |
309 |
Q |
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| T |
35128 |
ttctttcaaatattagaacaggaggagaggtttttat |
35092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5515 - 5574
Alignment:
| Q |
1 |
attttaatctgtttcttcatagttgaatctcaagccacgtcttatccttgagcatgatca |
60 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5515 |
attttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatca |
5574 |
T |
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