View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_high_2 (Length: 737)
Name: NF14913_high_2
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 25 - 393
Target Start/End: Complemental strand, 54958923 - 54958555
Alignment:
| Q |
25 |
accatttggatggaggacttgaccagtaaagtaagaagagtcctgaagagaagccaagaacaaataacaaggtgcaatctcacaaggctgacctgctcgt |
124 |
Q |
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| T |
54958923 |
accatttggatggaggacttgaccagtaaagtaagaagagtcctgtagagaagccaagaataaataacaaggtgcaatctcacaaggctgacctgctcgt |
54958824 |
T |
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| Q |
125 |
ttcattggcacatctgaccccaaattctgtatcttctcataagtcatagtagctggttgaactggcgtccaaattggtcctggtgcaacaccattcactc |
224 |
Q |
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| T |
54958823 |
ttcattggcacatctgaccccaaattctgtatcttctcataaggcatagtagctggttgaactggcgtccaaattggtcctggagcaacagcattcactc |
54958724 |
T |
|
| Q |
225 |
ttattccctttctcaccaactgctgagcaagacctctagtgaatgcaacaatggctcctttcgtcgatgtgtagtcgagtgtttccgctttacctgtgta |
324 |
Q |
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| T |
54958723 |
ttattcccttgctcaccaactgctgagcaagacctctagtgaatgcaacaatggctcctttcgtcgatgtgtagtcgagtgtttctgctttacctgtgta |
54958624 |
T |
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| Q |
325 |
ggcattcactgaggttgagtttataattgagctaccttctttcatgtgcttcagagcatgcctgcataa |
393 |
Q |
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| T |
54958623 |
ggcattcactgaggttgagtttatgattgagctaccttctttcatgtgcttcagagcatgcctgcataa |
54958555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 467 - 720
Target Start/End: Complemental strand, 54958453 - 54958197
Alignment:
| Q |
467 |
accaagaagaagtgtgaaaagatgttggtcctgaaaactctttcaagctgttgttcagtgatttcctctattgagtttttgaggtgttgttcagctgcat |
566 |
Q |
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| T |
54958453 |
accaagaagaagtgtgaaaagatgttggtcctgaaaactctttcaagctgttgttcagtgatttcctctattgagtttctgaggtgttgttcagctgcat |
54958354 |
T |
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| Q |
567 |
tgttgacaagaacatcaa---tgcgtccatactctttgacaacaagttccacaacctgtttgcaattctcatcatatccaatatcagctgcaatagctaa |
663 |
Q |
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| T |
54958353 |
tgttgacaagaacatcaatgctgcttccatattcttttacaacaagttccacaacctgtttacaattctcatcatatccaatatcagcagcaattgctaa |
54958254 |
T |
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| Q |
664 |
tggttcttgtgcatcatttgtcttggcttctagcaacatcttcagagtatcatcctt |
720 |
Q |
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| T |
54958253 |
tggttcttgtgcatcacttgtcttggcttctagcaacatcttcagagtatcatcctt |
54958197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 321 - 392
Target Start/End: Original strand, 36832394 - 36832465
Alignment:
| Q |
321 |
tgtaggcattcactgaggttgagtttataattgagctaccttctttcatgtgcttcagagcatgcctgcata |
392 |
Q |
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|||| ||||||||||| |||| ||| ||||| ||| |||||||||||||||||||| ||||||||||||| |
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| T |
36832394 |
tgtatgcattcactgacgttgtgttaataatactgctcccttctttcatgtgcttcagtgcatgcctgcata |
36832465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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