View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_high_22 (Length: 217)
Name: NF14913_high_22
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 5017746 - 5017564
Alignment:
| Q |
16 |
ataatactaaaaatgagttttaaaagtttatacaaaatgatatatcaatcagtatagatcattatgttcaatcctggatatcccagtaaggacaagtcat |
115 |
Q |
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| T |
5017746 |
ataatactaaaaatgagttttaagagtttatacaaaatgatatatcaatcagtatagatcattatgttcaatcctggaaatcccagtaaggacaagtcat |
5017647 |
T |
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| Q |
116 |
ctgaagagaaaaagttgcatacaaacctggaaatccaggaaatgtgtatccagcatggtagaacatattaggaactaagttat |
198 |
Q |
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| T |
5017646 |
ctgaagagaaaaagttgcatacaaacctggaaatccgggaaatgtgtatccagcatggtagaacatattaggaactaagttat |
5017564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 5005661 - 5005614
Alignment:
| Q |
109 |
aagtcatctgaagagaaaaagttgcatacaaacctggaaatccaggaa |
156 |
Q |
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| T |
5005661 |
aagtcatatgaagagaaaaagttccatacatacctggaaagccaggaa |
5005614 |
T |
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