View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_high_23 (Length: 205)
Name: NF14913_high_23
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 94222 - 94048
Alignment:
| Q |
19 |
aggggtaaaatcgtaatttccattaaaaaacataggcatgattggttttccaacagaaactgaggggtatttcgtgaatttgcattcaatttctttctct |
118 |
Q |
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| T |
94222 |
aggggtaaaatcgtaatttccattaaaa--cataggcatgattggttttccaacagaaactgaggggtatttcgtgaatttgcattcaatttctttctct |
94125 |
T |
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| Q |
119 |
ctctaaactttctcgttgtcttctccgatccaccttatgttctcaccaccactgcattttctccaatccactctctg |
195 |
Q |
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| T |
94124 |
ctctaaactttctcgttgtcttctccgatccaccttatgttctcaccaccactgcattttctccaatccaccctctg |
94048 |
T |
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Target: chr7; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 5480554 - 5480379
Alignment:
| Q |
21 |
gggtaaaatcgtaatttccattaaaaaacataggcatgattggttttccaacagaaactgaggggtattt-cgtgaatttgcattcaatttctttctctc |
119 |
Q |
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|||||||||||||||||| |||||||||||| | ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5480554 |
gggtaaaatcgtaatttcaattaaaaaacatggacataattggttttccaacagaacatgaggggtattttcgtgaatttgcattcaatttctttctctc |
5480455 |
T |
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| Q |
120 |
tctaaactttctcgttgtcttctccgatccaccttatgttctcaccaccactgcattttctccaatccactctctg |
195 |
Q |
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| T |
5480454 |
tctaaacattcttgttgtcttctccgatccaccttatgttctcaccaccactgcatcttctccaatccaccctctg |
5480379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 42262550 - 42262721
Alignment:
| Q |
19 |
aggggtaaaatcgtaatttccattaaaaaacataggcatgattggttttccaacagaaactgaggggtattt-cgtgaatttgcattcaatttctttctc |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
42262550 |
aggggtaaaatcgtaatttccattaaaaaacatgtgcataattggttttccaacagaaactgaggggtattttcgtgaattttcattcaatttctttctc |
42262649 |
T |
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| Q |
118 |
tctctaaactttctcgttgtcttctccgatccaccttatgttctcaccaccactgcattttctccaatccac |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42262650 |
tctctaaactttctcgttgtcttctccgatccaccttatgttctcaccaccactgcattttctccaatccac |
42262721 |
T |
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