View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_high_4 (Length: 671)

Name: NF14913_high_4
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_high_4
NF14913_high_4
[»] chr8 (5 HSPs)
chr8 (63-633)||(32536156-32536707)
chr8 (432-636)||(18481113-18481317)
chr8 (18-67)||(32537538-32537587)
chr8 (562-634)||(26440816-26440888)
chr8 (556-636)||(7251110-7251190)
[»] chr3 (11 HSPs)
chr3 (432-636)||(51976640-51976844)
chr3 (432-636)||(36684785-36684989)
chr3 (434-636)||(8705594-8705796)
chr3 (434-636)||(9057481-9057683)
chr3 (472-625)||(49758956-49759109)
chr3 (442-662)||(45736356-45736577)
chr3 (434-587)||(26390803-26390956)
chr3 (486-636)||(4978441-4978591)
chr3 (556-608)||(25131088-25131140)
chr3 (563-633)||(38998918-38998988)
chr3 (572-617)||(47165391-47165436)
[»] chr2 (4 HSPs)
chr2 (432-636)||(24543093-24543297)
chr2 (432-636)||(29894348-29894552)
chr2 (432-636)||(36364920-36365124)
chr2 (556-607)||(12555415-12555466)
[»] chr1 (9 HSPs)
chr1 (432-636)||(11351624-11351828)
chr1 (441-636)||(6784167-6784362)
chr1 (432-621)||(20639470-20639659)
chr1 (448-636)||(21515101-21515287)
chr1 (556-634)||(44839886-44839964)
chr1 (556-636)||(2536509-2536589)
chr1 (500-579)||(32988972-32989051)
chr1 (563-634)||(51080701-51080772)
chr1 (597-636)||(52823500-52823539)
[»] chr7 (3 HSPs)
chr7 (432-662)||(23820403-23820634)
chr7 (434-536)||(24808878-24808980)
chr7 (556-634)||(21118399-21118476)
[»] chr6 (2 HSPs)
chr6 (432-622)||(942573-942763)
chr6 (556-636)||(4513076-4513156)
[»] chr5 (3 HSPs)
chr5 (486-636)||(41197383-41197533)
chr5 (440-626)||(36779439-36779623)
chr5 (553-636)||(30376454-30376537)
[»] chr4 (6 HSPs)
chr4 (432-636)||(43989285-43989488)
chr4 (472-618)||(19315935-19316081)
chr4 (570-636)||(43813198-43813264)
chr4 (556-618)||(1394129-1394191)
chr4 (563-608)||(49407130-49407175)
chr4 (557-605)||(9633063-9633111)


Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 63 - 633
Target Start/End: Complemental strand, 32536707 - 32536156
Alignment:
Q  63 cttcccctaaaccaaattataagagacaagactattattacaagcaaaaatttattatttttaaactatctaatacttttatttttaagctaaagtcaag 162  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                   |||| |||||| ||||||    
T  32536707 cttcctctaaaccaaattataagagacaagactactattacaagcaaaaatttattattttta-------------------tttttagctaatgtcaag 32536627  T
Q  163 acaaacctactaagtattgcattggacacttgccggtatgcaatagtcttgtatggtcacacgagatctagactgtctacacataaagagacacatttct 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  32536626 acaaacctactaagtattgcattggacacttgccggtatgcaatagtcttgtatggtcacacgagatctagagtgtctacacataaagagacacatttat 32536527  T
Q  263 ctaaaatgtgcaatcaaattattatttttattattaaaagaagtatctcattgtgtgtctaaacacaacagatttggtcctagttggattgtttctctcc 362  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  32536526 ctaaactgtgcaatcaaattattatttttattattaaaagaagtatctcattgtgtgtctaaacacaacatatttggtcttagtcggattgtttctctcc 32536427  T
Q  363 tctttgatatgtttatgtgggacaggctgttggtctttactctttacacgacattgcagctactcttttattatgatcatgttgattttgctttggatta 462  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32536426 tctttgatatgtttatgtgggataggctgttggtctttactctttacacgacattgcagctactcttttattatgatcatgtcgattttgctttggatta 32536327  T
Q  463 caagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctg 562  Q
    ||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||    
T  32536326 caagtttattgtagatcgctttcattcaaacctagacgataatagtgaactaggttgtattattcaggcttgtaaacaattgattgcttgtaattttatg 32536227  T
Q  563 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 633  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  32536226 aactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtgaattagctagggtagccccatc 32536156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 432 - 636
Target Start/End: Original strand, 18481113 - 18481317
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  18481113 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 18481212  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    ||||| ||| ||| | | ||||||||||| ||||||| ||||||||||||||||||   |||| ||||||||| ||| | |||||||||||||||| |||    
T  18481213 ttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagcccca 18481312  T
Q  632 tctca 636  Q
    |||||    
T  18481313 tctca 18481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 32537587 - 32537538
Alignment:
Q  18 attttcaccattgctcgtaaagaggtttgtatttttcttagctagcttcc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32537587 attttcaccattgctcgtaaagaggtttgtatttttcttagctagcttcc 32537538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 634
Target Start/End: Original strand, 26440816 - 26440888
Alignment:
Q  562 gaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 634  Q
    ||||||| ||||||||||||||||||  |||| ||||||||| |||| ||| |||||||||||||| ||||||    
T  26440816 gaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccccatct 26440888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 636
Target Start/End: Original strand, 7251110 - 7251190
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    ||||| ||||||||||||||||||||||||||  |||   |||||| || ||| || |||| ||| |||||| ||||||||    
T  7251110 ttttcagaactcttatgtcgagttcaataggaggcaaaccaatgggatcactcatgcattaactaaggtagccccatctca 7251190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 432 - 636
Target Start/End: Original strand, 51976640 - 51976844
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  51976640 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 51976739  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    ||||| | | ||| ||| ||||||||||| ||||||| ||| ||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||    
T  51976740 ttgtagaaagttgtttgattgtaattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctcca 51976839  T
Q  632 tctca 636  Q
    |||||    
T  51976840 tctca 51976844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 432 - 636
Target Start/End: Original strand, 36684785 - 36684989
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || |  ||| ||||||| ||||  ||||||||||||||||||||||| |||||| |    
T  36684785 attatgacaatgttgattttgttttggattgcaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggc 36684884  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||| |||    
T  36684885 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagcccca 36684984  T
Q  632 tctca 636  Q
    |||||    
T  36684985 tctca 36684989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 434 - 636
Target Start/End: Original strand, 8705594 - 8705796
Alignment:
Q  434 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 533  Q
    ||||| ||||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  8705594 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 8705693  T
Q  534 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 633  Q
    |||   | ||| ||| ||||||||||| ||||||| ||||||||||||||||||  |||| ||||| |||||||  |||||||| ||||||||| |||||    
T  8705694 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 8705793  T
Q  634 tca 636  Q
    |||    
T  8705794 tca 8705796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 434 - 636
Target Start/End: Original strand, 9057481 - 9057683
Alignment:
Q  434 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 533  Q
    ||||| ||||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  9057481 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 9057580  T
Q  534 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 633  Q
    |||   | ||| ||| ||||||||||| ||||||| ||||||||||||||||||  |||| ||||| |||||||  |||||||| ||||||||| |||||    
T  9057581 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 9057680  T
Q  634 tca 636  Q
    |||    
T  9057681 tca 9057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 472 - 625
Target Start/End: Complemental strand, 49759109 - 49758956
Alignment:
Q  472 tgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttat 571  Q
    |||| |||| ||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||     ||| ||||||||||||||| ||||||||||    
T  49759109 tgtatatcgttttaattcaaacctagaggatagtagtgaactaggttgcattattcagacttgtaggctgttgcttgcttgtaattttcagaactcttat 49759010  T
Q  572 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggta 625  Q
    |||| |||||||||||  |||| ||||||| |||||| ||||||  ||||||||    
T  49759009 gtcgggttcaataggaggcaagctaatgggatcgctcatgaattgactagggta 49758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 442 - 662
Target Start/End: Original strand, 45736356 - 45736577
Alignment:
Q  442 tgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataa 541  Q
    ||||||||||| |||||||| ||||| |  |||  | || ||| ||| ||||||||| ||||| |||||| |||||||||||||| ||  |||||   ||    
T  45736356 tgttgattttgttttggatttcaagtttgttgttcaacgttttaatttaaatctagatgatagcagtgaattaggttgtattatttaggtttgtaggcaa 45736455  T
Q  542 ttgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctcactcta 641  Q
    ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||    ||||||  ||||||| ||||||||||||||||  |||||||  |||    
T  45736456 ttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgcta 45736555  T
Q  642 a-tcacacatttatgatgatgt 662  Q
    | || ||| |||||||||||||    
T  45736556 actcccacgtttatgatgatgt 45736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 434 - 587
Target Start/End: Complemental strand, 26390956 - 26390803
Alignment:
Q  434 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 533  Q
    |||||| |||| || ||||||||||||| |||| |   ||||||||| ||| | | ||| ||||| |||||||||||||||||||| ||||| ||  |||    
T  26390956 tatgataatgtcgactttgctttggatttcaaggcacttgtagatcgttttaactgaaacctagaagatagtagtgaactaggttgcattatacaagctt 26390857  T
Q  534 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatagga 587  Q
    ||| | | ||| ||||||||| ||||   ||||||  |||||||||||||||||    
T  26390856 gtagacagttgtttgcttgtagtttttataactctcgtgtcgagttcaatagga 26390803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 636
Target Start/End: Complemental strand, 4978591 - 4978441
Alignment:
Q  486 attcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatag 585  Q
    ||||||| ||||  |||| |||| |||||||||||||||||| | ||||||   | ||| | | || |||||||| ||||||| |||||||||| ||||     
T  4978591 attcaaacctaggtgataatagtaaactaggttgtattattctggcttgtaggcacttgttcggttataattttcagaactctcatgtcgagtttaatat 4978492  T
Q  586 gaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    || |||||  |||| ||||| || |||||||||||| |||||  |||||||    
T  4978491 gagacaagccaatgaggtcgttcatgaattagctagcgtagccacatctca 4978441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 608
Target Start/End: Complemental strand, 25131140 - 25131088
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctc 608  Q
    ||||||||||||| |||||||||||||||| ||  ||||||||||||||||||    
T  25131140 ttttctgaactctcatgtcgagttcaatagaaagtaagttaatggggtcgctc 25131088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 633
Target Start/End: Original strand, 38998918 - 38998988
Alignment:
Q  563 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 633  Q
    |||||| |||||||||| |||||||  |||| ||||||||||||||  |||||||| |||||||| |||||    
T  38998918 aactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagcgagggtagccccatc 38998988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 617
Target Start/End: Complemental strand, 47165436 - 47165391
Alignment:
Q  572 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattag 617  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  47165436 gtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattag 47165391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 432 - 636
Target Start/End: Original strand, 24543093 - 24543297
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  24543093 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 24543192  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    ||||| ||| ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| |||    
T  24543193 ttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagcccca 24543292  T
Q  632 tctca 636  Q
    |||||    
T  24543293 tctca 24543297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 432 - 636
Target Start/End: Complemental strand, 29894552 - 29894348
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||| ||||||||||||| |    
T  29894552 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactagattgtattattcaggc 29894453  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| |||    
T  29894452 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagcccca 29894353  T
Q  632 tctca 636  Q
    |||||    
T  29894352 tctca 29894348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 432 - 636
Target Start/End: Original strand, 36364920 - 36365124
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || || ||| ||||||| ||||  ||||| ||||||||||||||||||||||| ||    
T  36364920 attatgacaatgttgattttgttttggattccaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcatac 36365019  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    |||||   | ||| | | |||| |||||| ||||||  ||||||||||||||||||  ||||  |||| |||||||| |||||||||||||||||| |||    
T  36365020 ttgtaggcagttgttcgattgtcattttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagcccca 36365119  T
Q  632 tctca 636  Q
    |||||    
T  36365120 tctca 36365124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 607
Target Start/End: Complemental strand, 12555466 - 12555415
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgct 607  Q
    ||||| ||||||| ||||| ||||||||||||  ||||||||||||||||||    
T  12555466 ttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgct 12555415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 432 - 636
Target Start/End: Complemental strand, 11351828 - 11351624
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  11351828 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 11351729  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| |||    
T  11351728 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagcccca 11351629  T
Q  632 tctca 636  Q
    |||||    
T  11351628 tctca 11351624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 441 - 636
Target Start/End: Original strand, 6784167 - 6784362
Alignment:
Q  441 atgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaata 540  Q
    |||||||||||| |||||||| |||||||  ||| || || ||| ||| ||| ||||  ||||| |||||||||||||||||||||||| |||||| | |    
T  6784167 atgttgattttgttttggattgcaagtctcttgttgaacgttttaatttaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagaca 6784266  T
Q  541 attgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
     ||| | | |||| |||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||  ||||||| |||||||||||||||||||    
T  6784267 gttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccatctca 6784362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 432 - 621
Target Start/End: Original strand, 20639470 - 20639659
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || |  ||| ||||||| ||||  |||||||||||||||||||||||||||||| |    
T  20639470 attatgacaatgttgattttgttttggattccaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtattattcaggc 20639569  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctag 621  Q
    |||||   | ||| | | ||||||||||| ||||||| |||| |||||||||||||  ||||  |||| |||| ||| ||||||||||||    
T  20639570 ttgtaggcagttgttcgattgtaattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctag 20639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 448 - 636
Target Start/End: Original strand, 21515101 - 21515287
Alignment:
Q  448 ttttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgatt 547  Q
    ||||| |||||||| |||||||  ||| || || ||| ||||||| ||||  ||||| |||||||||||||||||| |||||  |||||   | ||| |     
T  21515101 ttttgttttggattgcaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtatttttcaggtttgtaggcagttgttc 21515200  T
Q  548 gcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    |  |||||||||| ||||||  ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| ||||||||    
T  21515201 gaatgtaattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctca 21515287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 634
Target Start/End: Complemental strand, 44839964 - 44839886
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 634  Q
    ||||| ||||||| ||||||||||||||||||  ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  44839964 ttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccatct 44839886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 2536589 - 2536509
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    ||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||| ||||||||| ||||||||    
T  2536589 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctca 2536509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 579
Target Start/End: Complemental strand, 32989051 - 32988972
Alignment:
Q  500 gatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagtt 579  Q
    ||||| |||||||||||||||||||||||||||||||   | ||| | | |||||| |||| ||||||| ||||||||||    
T  32989051 gatagcagtgaactaggttgtattattcagacttgtaggcagttgttcgattgtaactttcagaactctcatgtcgagtt 32988972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 563 - 634
Target Start/End: Complemental strand, 51080772 - 51080701
Alignment:
Q  563 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 634  Q
    |||||| |||||||||| |||||||  |||  |||||||||||||| ||||||||| |||||||| ||||||    
T  51080772 aactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagcgagggtagccccatct 51080701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 636
Target Start/End: Complemental strand, 52823539 - 52823500
Alignment:
Q  597 atggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  52823539 atggggtcgctcatgaattagttagggtagctccatctca 52823500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 432 - 662
Target Start/End: Original strand, 23820403 - 23820634
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    ||||||| |||||| |||||| |||||||| |||||||  ||| |  | |||| ||||||| ||||  ||||||||||||||||||||||| ||||||      
T  23820403 attatgaccatgttaattttgttttggattccaagtctgttgttgtacactttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggt 23820502  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    |||||   | ||| ||| ||||||||||| ||||||| || |||||||||||||||  ||||  ||||||||||||| |||||||| |||||||| ||||    
T  23820503 ttgtaggcagttgtttgattgtaattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatcca 23820602  T
Q  632 tctcactcta-atcacacatttatgatgatgt 662  Q
    |||||  |||  || |||||||||||||||||    
T  23820603 tctcatgctagctcccacatttatgatgatgt 23820634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 434 - 536
Target Start/End: Complemental strand, 24808980 - 24808878
Alignment:
Q  434 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 533  Q
    ||||| ||||||||||||| ||| |||| |||||||  ||| ||||| ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  24808980 tatgaccatgttgattttgttttagattccaagtctgttgttgatcgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 24808881  T
Q  534 gta 536  Q
    |||    
T  24808880 gta 24808878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 634
Target Start/End: Original strand, 21118399 - 21118476
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 634  Q
    ||||| ||||||| ||||||||||||||||||  |||| ||||| |||| ||| ||  |||||||||||||| ||||||    
T  21118399 ttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcaccatct 21118476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 432 - 622
Target Start/End: Original strand, 942573 - 942763
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| | ||||| ||||  |||||||||||||||||||||||||||||| |    
T  942573 attatgacaatgttgattttgttttggattccaagtctgttgttgaacattttaagtcaaacctaggtgatagtagtgaactaggttgtattattcaggc 942672  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagg 622  Q
    |||||   | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  |||||||||||||||||||||||||||    
T  942673 ttgtaggcagttgttcgattgtaattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctagg 942763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 636
Target Start/End: Original strand, 4513076 - 4513156
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    ||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||  |||||||||||||||||| ||||||||    
T  4513076 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctca 4513156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 486 - 636
Target Start/End: Complemental strand, 41197533 - 41197383
Alignment:
Q  486 attcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatag 585  Q
    ||||||| ||||  ||||| ||||||||||||||||||||| || ||| || | | ||| | | ||||||||||| ||||||||||||||||||||||||    
T  41197533 attcaaacctaggtgatagcagtgaactaggttgtattatttaggcttatagacagttgttcgattgtaattttcagaactcttatgtcgagttcaatag 41197434  T
Q  586 gaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    ||  ||||  ||||||||||||| |||||||||||||||||| ||||||||    
T  41197433 gaggcaagccaatggggtcgctcatgaattagctagggtagccccatctca 41197383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 626
Target Start/End: Complemental strand, 36779623 - 36779439
Alignment:
Q  440 catgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaat 539  Q
    ||||||||||||  |||||||| |||||||| ||| || || ||| ||||||| |||   || |||||||||||||||||||||||| || ||||||       
T  36779623 catgttgattttattttggattccaagtctattgttgaacgttttaattcaaacctaattgagagtagtgaactaggttgtattattaaggcttgtaggc 36779524  T
Q  540 aattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtag 626  Q
    | ||| ||| ||||||  ||| ||||||| ||||||||| ||||||||  ||||  ||| | ||| ||| || ||||||||||||||    
T  36779523 agttgtttggttgtaa--ttcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtag 36779439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 553 - 636
Target Start/End: Complemental strand, 30376537 - 30376454
Alignment:
Q  553 taattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    ||||||||  |||||||||||||||||||||||||  ||||  ||| ||||||||| ||||||||||| ||||||  |||||||    
T  30376537 taattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcatctca 30376454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 432 - 636
Target Start/End: Complemental strand, 43989488 - 43989285
Alignment:
Q  432 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 531  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  43989488 attatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 43989389  T
Q  532 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 631  Q
    ||| | | ||||| | | |||| |||||  |||| || ||||||||||||||||||  ||||  |||| |||||||| |||||||| ||||||||| |||    
T  43989388 ttgcagacaattgttcgattgt-atttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagcccca 43989290  T
Q  632 tctca 636  Q
    |||||    
T  43989289 tctca 43989285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 618
Target Start/End: Complemental strand, 19316081 - 19315935
Alignment:
Q  472 tgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttat 571  Q
    |||||||| |||| | |||||| |||| ||||||||||| |||||||| ||||| ||  |||||| ||| ||| ||| |   | ||||| ||||||| ||    
T  19316081 tgtagatcactttaagtcaaatgtagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcat 19315982  T
Q  572 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagc 618  Q
    ||||||||||||||||  ||||  ||||| |||| || |||||||||    
T  19315981 gtcgagttcaataggaggcaagccaatggagtcgttcatgaattagc 19315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 636
Target Start/End: Complemental strand, 43813264 - 43813198
Alignment:
Q  570 atgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 636  Q
    |||||||||||||||| | |||||| |||||||||| || |||||||| ||||||||| ||||||||    
T  43813264 atgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctca 43813198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 1394129 - 1394191
Alignment:
Q  556 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagc 618  Q
    ||||| ||||||| ||||||||||||||||||  |||| ||||||||||| || |||||||||    
T  1394129 ttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagc 1394191  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 608
Target Start/End: Complemental strand, 49407175 - 49407130
Alignment:
Q  563 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctc 608  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||    
T  49407175 aactcttatgtcaagttcaataggaagcaagtaaatagggtcgctc 49407130  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 605
Target Start/End: Original strand, 9633063 - 9633111
Alignment:
Q  557 tttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcg 605  Q
    |||| ||||||| ||||||||||||||||||  ||||| ||||||||||    
T  9633063 tttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcg 9633111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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