View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_high_5 (Length: 594)

Name: NF14913_high_5
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_high_5
NF14913_high_5
[»] chr5 (3 HSPs)
chr5 (95-594)||(39679448-39679947)
chr5 (132-566)||(39642315-39642749)
chr5 (122-548)||(39637641-39638067)
[»] chr1 (1 HSPs)
chr1 (122-566)||(7056177-7056621)


Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 95 - 594
Target Start/End: Original strand, 39679448 - 39679947
Alignment:
Q  95 tctccatggccatcgaaacagaaacccaaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  39679448 tctccatggccatcgaaacagaaacccaaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgtcagagccaacccaaaatcagaccg 39679547  T
Q  195 gttcaatgtaaaacgcttccaccacgtcgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39679548 gttcaatgtaaaacgcttccaccacgtcgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgct 39679647  T
Q  295 aaatccgacctctccaccggaaacctaactcacgcttcttatctcctccgctccggcgacctcaacttcctcctctccgccgcatattccccttccattt 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39679648 aaatccgacctctccaccggaaacctaactcacgcttcttatctcctccgctccggcgacctcaacttcctcttctccgccgcatattccccttccattt 39679747  T
Q  395 ctctctcctcacgttcctcaaccgccgcaatccccactttctccgcttccacttgcttctccttctccgcttcccacggcctcgccgtccgtgctgttgc 494  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39679748 ctctctcctcaccttcctcaaccgccgcaatccccactttctccgcttccacttgcttctccttctccgcttcccacggcctcgccgtccgtgctgttgc 39679847  T
Q  495 tgttgaagtcgaagacgctgaagtcgctttcaccaccagcgtaaaccacggtgcaattccatcgtcccctccggttatcctcgaaaataacgtcaaactc 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39679848 tgttgaagtcgaagacgctgaagtcgctttcaccaccagcgtaaacctcggtgcaattccatcgtctcctccggttatcctcgaaaataacgtcaaactc 39679947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 132 - 566
Target Start/End: Complemental strand, 39642749 - 39642315
Alignment:
Q  132 ccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgtcgagttctgg 231  Q
    ||||||||||||||| |||||||| | ||| || ||| | ||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||    
T  39642749 ccaaaccgggttcaagttagttgggtgcaaaaatttcatccgaaccaacccaaaaacagaccggttcaaagtaaaacacttccaccacgtcgagttctgg 39642650  T
Q  232 tgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaacctaactcacgctt 331  Q
    |||||||||||||||||||| |||| ||| |||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||||    
T  39642649 tgcaccgacgcaacaaacactgcacaccgtttctctcatggactcggcatgccaatcgtcgccaaatccgacctctccaccggaaaccttactcacgctt 39642550  T
Q  332 cttatctcctccgctccggcgacctcaacttcctcctctccgccgcatattccccttccatttctctctcctcacgttcctcaaccgccgcaatccccac 431  Q
    | ||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| | || || ||    
T  39642549 cctatctcctccgctccggtgacctcaatttcctcttcaccgccgcatattccccttccatttctctctcctcaccttcctcaaccgcctccattccaac 39642450  T
Q  432 tttctccgcttccacttgcttctccttctccgcttcccacggcctcgccgtccgtgctgttgctgttgaagtcgaagacgctgaagtcgctttcaccacc 531  Q
    ||||||| | |||||||||||||||||||||   ||||||||||||  |||||| ||  | ||||| ||||| |||||||| ||| |||||| ||||  |    
T  39642449 tttctccccctccacttgcttctccttctccaactcccacggcctcaacgtccgcgccctcgctgtcgaagttgaagacgcggaactcgcttacaccgtc 39642350  T
Q  532 agcgtaaaccacggtgcaattccatcgtcccctcc 566  Q
    ||||||| | |||| ||| ||||||| || |||||    
T  39642349 agcgtaagctacggcgcacttccatcatctcctcc 39642315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 122 - 548
Target Start/End: Complemental strand, 39638067 - 39637641
Alignment:
Q  122 aaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgt 221  Q
    |||||| |||||||||||||||||| |||||||| || || ||||||||  ||||||||||||||||||||   |||||  | |||||||| ||||||||    
T  39638067 aaacccgaacccaaaccgggttcaagttagttggatttaaaaacttcgtctgagccaacccaaaatcagacttattcaaattcaaacgctttcaccacgt 39637968  T
Q  222 cgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaaccta 321  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||| |||| ||||    
T  39637967 cgagttctggtgcactgacgcaacaaacaccgcacgccgattctctcacggactcggaatgccaatcgttgctaaatccgacctctccactggaatccta 39637868  T
Q  322 actcacgcttcttatctcctccgctccggcgacctcaacttcctcctctccgccgcatattccccttccatttctctctcctcacgttcctcaaccgccg 421  Q
    ||||| ||||| || |||||||||||||||||||||||  ||||  ||||||| || || |||||||| ||||| |||||||||| |||| |||| |||     
T  39637867 actcatgcttcctacctcctccgctccggcgacctcaatctccttttctccgcagcttactccccttctatttcactctcctcaccttccccaacggcct 39637768  T
Q  422 caatccccactttctccgcttccacttgcttctccttctccgcttcccacggcctcgccgtccgtgctgttgctgttgaagtcgaagacgctgaagtcgc 521  Q
    | || ||| | ||||| ||  |  | |||||  ||||||| || || ||||||||| | ||||| || |||||||| || || ||  |||| ||| ||||    
T  39637767 ccattccctccttctctgcccctgcctgctttgccttctctgcctctcacggcctctcagtccgcgccgttgctgtcgaggttgacaacgcagaactcgc 39637668  T
Q  522 tttcaccaccagcgtaaaccacggtgc 548  Q
     |||||||| |||||||||||||||||    
T  39637667 cttcaccacaagcgtaaaccacggtgc 39637641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 122 - 566
Target Start/End: Complemental strand, 7056621 - 7056177
Alignment:
Q  122 aaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgt 221  Q
    |||| |||||| ||||||||||||| |||||||| ||||| || ||| | ||| ||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  7056621 aaacacaaaccaaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgcttccaccacgt 7056522  T
Q  222 cgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaaccta 321  Q
     || |||||||||||||||||||| ||||||||||  || |||||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||||    
T  7056521 ggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccaccggaaaccta 7056422  T
Q  322 actcacgcttcttatctcctccgctccggcgacctcaacttcctcctctccgccgcatattccccttccatttctctctcctcacgttcctcaaccgccg 421  Q
    | ||||||||| |||||||||||||| ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||     
T  7056421 attcacgcttcctatctcctccgctctggcgacctcaatttcctcttctccgccccatattccccttccatttctctctcctcgccttcctcaaccgcct 7056322  T
Q  422 caatccccactttctccgcttccacttgcttctccttctccgcttcccacggcctcgccgtccgtgctgttgctgttgaagtcgaagacgctgaagtcgc 521  Q
    | || ||||| ||||| || ||||||||||||||||||| |||||| |||||||| ||||| || ||  | ||| |||||||||| ||||| ||| ||||    
T  7056321 ccattcccaccttctctgcctccacttgcttctccttctgcgcttcacacggccttgccgttcgcgccatcgctattgaagtcgacgacgcagaactcgc 7056222  T
Q  522 tttcaccaccagcgtaaaccacggtgcaattccatcgtcccctcc 566  Q
     |||||   ||||||||||||||| ||| ||||||| || |||||    
T  7056221 cttcactgtcagcgtaaaccacggcgcacttccatcatctcctcc 7056177  T

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