View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_low_12 (Length: 359)
Name: NF14913_low_12
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 6567363 - 6567475
Alignment:
| Q |
22 |
ggatggttgcgttcttgcttcttgataactctcaggagtcaataatggttcttatggtatttattctcttccacatgtgacttttatgatttgcaaattt |
121 |
Q |
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| T |
6567363 |
ggatggttgcgttcttgcttcttgataactctcaggagtcaataatggatcttatggtacttattcgcttccgcaagtgacttttatgatttgcaaattt |
6567462 |
T |
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| Q |
122 |
tcttttccctaac |
134 |
Q |
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| T |
6567463 |
tcttttccctaac |
6567475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 6598340 - 6598433
Alignment:
| Q |
241 |
ttattagaatttgagcacaagtacagtcacgtttcaattgtgcaagtgaggtccaatatgatgaaaacaacacaacatagcagtaaaaaccgaa |
334 |
Q |
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| T |
6598340 |
ttattagaatttgagcacaagtatagtcacatttcaattgtgctagtgaggtccaacatgatgaaaacaacacaacatagcagtaaaaaccgaa |
6598433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 200 - 331
Target Start/End: Original strand, 6568102 - 6568230
Alignment:
| Q |
200 |
agaattgaagctttcaaagatgatcagagattnnnnnnnnnttattagaatttgagcacaagtacagtcacgtttcaattgtgcaagtgaggtccaatat |
299 |
Q |
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| T |
6568102 |
agaattgaagcattcaaagatgattagagattaaaata---ttattagaatttgagcacaagtacagtcacatttcaattgtgcgagtgagatccaacat |
6568198 |
T |
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| Q |
300 |
gatgaaaacaacacaacatagcagtaaaaacc |
331 |
Q |
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| T |
6568199 |
gatgaaaacaacacaacatagcagtaaaaacc |
6568230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 6652803 - 6652863
Alignment:
| Q |
22 |
ggatggttgcgttcttgcttcttgataactctcaggagtcaataatggttcttatggtatt |
82 |
Q |
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| T |
6652803 |
ggatggttgcgttcttgcttcttgataactctcaggagtcaataatggttcttatggtatt |
6652863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 6733203 - 6733263
Alignment:
| Q |
22 |
ggatggttgcgttcttgcttcttgataactctcaggagtcaataatggttcttatggtatt |
82 |
Q |
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| T |
6733203 |
ggatggttgcgttcttgcttcttgataactctcaggagtcaataatggttcttatggtatt |
6733263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 6567749 - 6567815
Alignment:
| Q |
133 |
actgattggttaaagactcattgaagacatgcaaaatccatttttgatttcaagaatgcagatacaa |
199 |
Q |
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| T |
6567749 |
actgactggttaaagactcattgaagacgtgcaaaatccatttttgatttcaagaatgcagatacaa |
6567815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 6653015 - 6653107
Alignment:
| Q |
241 |
ttattagaatttgagcacaagtacagtcacgtttcaattgtgcaagtgaggtccaatatgatgaaaacaacacaacatagcagtaaaaaccgaa |
334 |
Q |
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| T |
6653015 |
ttattagaattttagcacaag-acagtcacatttcaattgtgctaatgagatccaacatgataaaaacaagacaacatagcagtaaaaaccgaa |
6653107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 6733415 - 6733507
Alignment:
| Q |
241 |
ttattagaatttgagcacaagtacagtcacgtttcaattgtgcaagtgaggtccaatatgatgaaaacaacacaacatagcagtaaaaaccgaa |
334 |
Q |
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| T |
6733415 |
ttattagaattttagcacaag-acagtcacatttcaattgtgctaatgagatccaacatgataaaaacaagacaacatagcagtaaaaaccgaa |
6733507 |
T |
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