View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_low_15 (Length: 353)

Name: NF14913_low_15
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_low_15
NF14913_low_15
[»] chr1 (2 HSPs)
chr1 (1-156)||(12801154-12801309)
chr1 (221-347)||(12801374-12801503)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 12801154 - 12801309
Alignment:
Q  1 gtcaatttatctgatcctccaaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattgtgaaactgaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12801154 gtcaatttatctgatcctccaaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattgtgaaactgaccaa 12801253  T
Q  101 gattattgttatcatatattgaagtgtttccattcccaagagagttcatcaatcca 156  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12801254 ggttattgttatcatatattgaagtgtttccattcccaagagagttcatcaatcca 12801309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 221 - 347
Target Start/End: Original strand, 12801374 - 12801503
Alignment:
Q  221 aaccaatttgagcagctttttgaagcaatgcagttgccgacatatgtggcgaagacaacatgttctc---ttgttgcatggatgaattaccaaagagtga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||| ||||||||||||||||||||    
T  12801374 aaccaatttgagcagctttttgaagcaatgcagttgccgacatgtgtggcgaagacaacatgttctcttgttgttgcattgatgaattaccaaagagtga 12801473  T
Q  318 agaaaaaccatcatgttgttgatgatgatg 347  Q
    ||||||||| ||||| ||||||||||||||    
T  12801474 agaaaaaccttcatgatgttgatgatgatg 12801503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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