View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_low_17 (Length: 340)
Name: NF14913_low_17
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 44094428 - 44094126
Alignment:
| Q |
18 |
aaagcaggtgtttatagagagaatgttgatatcaagaagacagtgaagaatttaatgatattcggagatggaatggattctactattgttactggcaatc |
117 |
Q |
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| T |
44094428 |
aaagcaggtatttataaagagaatgttgatatcaagaagacagtgaagaatttaatgatattcggagatggaatggattctactattgttactggcaatc |
44094329 |
T |
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| Q |
118 |
ataatgctatagatggttctactacttttcgttcagctacttttggtaagttaatcaatccttaatcactcatctattcatatatgatatatctatattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44094328 |
ataatgctatagatggttctactacttttcgttcagctacttttggtaagttaatcaatccttaatcactcatctattcatatatgatatatctatattc |
44094229 |
T |
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| Q |
218 |
tatatgcatgggagaaatcatatgatcaatggaacagtacgtaacaataacagtaatagtagtaatattaaaacactttgaattaagtgaacactagaaa |
317 |
Q |
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| T |
44094228 |
tatatgcatgggagaaatcatatgatcaatggaatagtacgtaacaataacagtaatagtagtaatattaaaacactttgaattaagtgaacactagaaa |
44094129 |
T |
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| Q |
318 |
ata |
320 |
Q |
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||| |
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| T |
44094128 |
ata |
44094126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 44086023 - 44086195
Alignment:
| Q |
18 |
aaagcaggtgtttatagagagaatgttgatatcaagaagacagtgaagaatttaatgatattcggagatggaatggattctactattgttactggcaatc |
117 |
Q |
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|||||||||||||||| ||||||| | |||||||| | |||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
44086023 |
aaagcaggtgtttataaagagaatatcgatatcaaaaggacaatgtcaaatttaatgatatttggagatggaatggattctactattgttactggtaatc |
44086122 |
T |
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| Q |
118 |
ataatgctatagatggttctactacttttcgttcagctacttttggtaagttaatcaatccttaatcactcat |
190 |
Q |
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| T |
44086123 |
aaaatgctatagatggttctaccacatttcgttcagctactttcggtaagttcttcaatagttaatcactcat |
44086195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 44069179 - 44069007
Alignment:
| Q |
18 |
aaagcaggtgtttatagagagaatgttgatatcaagaagacagtgaagaatttaatgatattcggagatggaatggattctactattgttactggcaatc |
117 |
Q |
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||||||||| |||||| ||||||| |||||||||| | |||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||| |
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| T |
44069179 |
aaagcaggtatttataaagagaatattgatatcaaaagcacagtgtcaaatttaatgatatttggagatggaatggattctactagtgttactggtaatc |
44069080 |
T |
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| Q |
118 |
ataatgctatagatggttctactacttttcgttcagctacttttggtaagttaatcaatccttaatcactcat |
190 |
Q |
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| T |
44069079 |
aaaatgctatagatggttctaccacatttcgttcagctactttcggtaagttcttcaatagttaatcactcat |
44069007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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