View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_low_22 (Length: 300)

Name: NF14913_low_22
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_low_22
NF14913_low_22
[»] chr7 (1 HSPs)
chr7 (14-283)||(19807857-19808126)
[»] chr2 (14 HSPs)
chr2 (146-283)||(39137907-39138044)
chr2 (81-283)||(39381315-39381517)
chr2 (87-254)||(39421642-39421809)
chr2 (82-272)||(39459300-39459487)
chr2 (153-243)||(39473285-39473375)
chr2 (159-272)||(39397731-39397844)
chr2 (146-272)||(39152623-39152749)
chr2 (185-283)||(39414690-39414788)
chr2 (18-60)||(39138231-39138273)
chr2 (98-193)||(39161948-39162043)
chr2 (98-193)||(39207151-39207246)
chr2 (146-197)||(39389027-39389078)
chr2 (146-272)||(39370156-39370282)
chr2 (133-173)||(39215755-39215795)
[»] chr8 (1 HSPs)
chr8 (81-191)||(45342158-45342268)
[»] chr6 (1 HSPs)
chr6 (111-272)||(16113347-16113508)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 19808126 - 19807857
Alignment:
Q  14 agacagtgttaaattgattaataattataaacaagactagaaatagttgcacttatataatccaaacatgtaaatcaggttattaaaaatatcaacgtca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  19808126 agacagtgttaaattgattaataattataaacaagactagaaatagttgcacttatataatccaaacatgtagatcaggttattaaaaatatcaacatca 19808027  T
Q  114 taaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19808026 taaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttacccgatgctttttcctcatcaaaatagtttattaatgattca 19807927  T
Q  214 aattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatcct 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807926 aattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatcct 19807857  T

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Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 39138044 - 39137907
Alignment:
Q  146 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 245  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||    
T  39138044 ataaactagatgaataagaactcttacccgattctttttcctcatcaaaatagtttatcaatgattcaaattgtttctctgtcagttcaggctccttcaa 39137945  T
Q  246 ttgtccatcaaatttatccagctttgaaccaggatcct 283  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39137944 ttgtccatcaaatttatccagctttgaaccaggatcct 39137907  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 283
Target Start/End: Original strand, 39381315 - 39381517
Alignment:
Q  81 atgtaaatcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgct 180  Q
    ||||| |||| |||| ||||| ||||||| |||| |||||||||| ||||||||||| || |||  ||||||| |||||||||||| |||||||||| ||    
T  39381315 atgtagatcaagttaataaaagtatcaacatcattaaaagaaacaactgaaatgaaattctttcagtaaactatatgaataagaacatttaccagattct 39381414  T
Q  181 ttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggat 280  Q
    |  ||||| |||| ||| ||| |||||| |||| |||||||  ||||||| | || ||| |||| ||||||||| |||||||  ||||||||| ||||||    
T  39381415 tgctcctcgtcaatatattttcttaatgcttcatattgtttacctgtcaatttaggctctttcatttgtccatccaatttatttagctttgaatcaggat 39381514  T
Q  281 cct 283  Q
    |||    
T  39381515 cct 39381517  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 254
Target Start/End: Original strand, 39421642 - 39421809
Alignment:
Q  87 atcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcc 186  Q
    ||||| ||||||||||||||||| ||||   ||||||||| ||||||||||||| ||| ||||| ||||||||||||||| |||||||||| | ||||||    
T  39421642 atcagattattaaaaatatcaacatcattgtaagaaacagttgaaatgaaactctttcaataaattagatgaataagaacatttaccagattcattttcc 39421741  T
Q  187 tcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatc 254  Q
    ||||||||||| | |  || | |  || | ||||||||||||||||||| |||||||| |||| ||||    
T  39421742 tcatcaaaatattcttctattaaagcatactgtttctctgtcaactcaggctccttcagttgttcatc 39421809  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 272
Target Start/End: Complemental strand, 39459487 - 39459300
Alignment:
Q  82 tgtaaatcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctt 181  Q
    |||| |||||||||| ||||||| || | |||| ||| ||||  | |||||||||| |  ||| |||| ||| ||||||||||||  ||||| ||| ||     
T  39459487 tgtagatcaggttataaaaaataaca-catcattaaatgaaattgttgaaatgaaatt--ttcaataagctaaatgaataagaacacttacccgattctg 39459391  T
Q  182 tttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttga 272  Q
    ||||||||||||||||||| ||||||| |||| |||||||| |||||||||||| |||||||| |||||||||||| ||||  ||||||||    
T  39459390 tttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttga 39459300  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 39473285 - 39473375
Alignment:
Q  153 agatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttc 243  Q
    |||||||||||||| |||||| ||| || |||||||||||||||| |||||||||| |||| || |||||||||||||||||| |||||||    
T  39473285 agatgaataagaacatttacccgattctatttcctcatcaaaatattttattaatggttcatatcgtttctctgtcaactcaggctccttc 39473375  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 39397731 - 39397844
Alignment:
Q  159 ataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaat 258  Q
    |||||||| |||||| ||| ||||||||||||  | ||| ||| |||| | |||| |||||||| |||||||||||| |||||||| |||||||||||||    
T  39397731 ataagaacctttacccgattctttttcctcattgatatatttttttaacgcttcatattgtttccctgtcaactcaggctccttcagttgtccatcaaat 39397830  T
Q  259 ttatccagctttga 272  Q
    ||||||||| ||||    
T  39397831 ttatccagccttga 39397844  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 39152749 - 39152623
Alignment:
Q  146 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 245  Q
    ||||||||||  ||||| ||| |||||| ||| || |||||||||||||||| |||||||||| | || |||||||||||||||| |||  ||||||| |    
T  39152749 ataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatattttattaatggtccatattgtttctctgtcaaatcatgctccttcga 39152650  T
Q  246 ttgtccatcaaatttatccagctttga 272  Q
     |||||||||  |||||  ||||||||    
T  39152649 ctgtccatcatgtttatttagctttga 39152623  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 39414690 - 39414788
Alignment:
Q  185 cctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatcct 283  Q
    ||||||||||||  |||||||| | |||| ||||||| ||| |||||||||||||||||   |||||||||||||| |||||||||||  |||||||||    
T  39414690 cctcatcaaaatcttttattaacggttcatattgtttttctctcaactcagactccttccggtgtccatcaaatttttccagctttgactcaggatcct 39414788  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 39138273 - 39138231
Alignment:
Q  18 agtgttaaattgattaataattataaacaagactagaaatagt 60  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  39138273 agtgttaaattgattaataattataaacaagacttgaaatagt 39138231  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 39162043 - 39161948
Alignment:
Q  98 aaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaa 193  Q
    |||||||||| | |||| ||||| ||||| |  ||| ||| || ||| |||| ||||||||| |||||| |||||| ||| |||||||||||||||    
T  39162043 aaaaatatcatcatcattaaaaggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39161948  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 39207151 - 39207246
Alignment:
Q  98 aaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaa 193  Q
    |||||||||| | |||| ||||| ||||| |  ||| ||| || ||| |||| ||||||||| |||||| |||||| ||| |||||||||||||||    
T  39207151 aaaaatatcatcatcattaaaaggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39207246  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 39389027 - 39389078
Alignment:
Q  146 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaata 197  Q
    ||||||| ||||||||||||| |||||| ||| |||||||| ||||||||||    
T  39389027 ataaactggatgaataagaacatttaccggattctttttccccatcaaaata 39389078  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 39370282 - 39370156
Alignment:
Q  146 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 245  Q
    ||||||||||||||||||||| ||||||  |  ||||||||||  ||| ||  | | ||||||  ||| ||||||||| |||| |||||| || ||| |     
T  39370282 ataaactagatgaataagaacatttacccaaatctttttcctcggcaatatgctctgttaatgcgtcatattgtttctttgtcgactcaggcttctttag 39370183  T
Q  246 ttgtccatcaaatttatccagctttga 272  Q
    ||||||||| ||||||| || ||||||    
T  39370182 ttgtccatccaatttattcatctttga 39370156  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 39215795 - 39215755
Alignment:
Q  133 tgaaactccttctataaactagatgaataagaacttttacc 173  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  39215795 tgaaactctttcaataaactagatgaataagaacatttacc 39215755  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 45342268 - 45342158
Alignment:
Q  81 atgtaaatcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgct 180  Q
    ||||| ||||||||||||||||||||||| |||  |||||||| || |||||||||| || ||| ||||||||||||||||| || |||||||| || ||    
T  45342268 atgtagatcaggttattaaaaatatcaacatcaacaaaagaaatagttgaaatgaaattctttcaataaactagatgaataacaaattttaccaaattct 45342169  T
Q  181 ttttcctcatc 191  Q
    |||||||||||    
T  45342168 ttttcctcatc 45342158  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 272
Target Start/End: Complemental strand, 16113508 - 16113347
Alignment:
Q  111 tcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgat 210  Q
    |||| ||||||| ||| |||||||||  |  ||| ||||||||||||||| |||||  ||||| ||| |||||||||| |||| ||  ||| | |||| |    
T  16113508 tcattaaaagaagcagttgaaatgaatttttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgttttttaaatgct 16113409  T
Q  211 tcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttga 272  Q
    ||| | |||||| |||| ||||||| |||||||| ||||||  ||||||  | |||||||||    
T  16113408 tcagagtgtttccctgttaactcaggctccttcagttgtccgccaaattcgttcagctttga 16113347  T

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