View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_low_23 (Length: 277)
Name: NF14913_low_23
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 3498598 - 3498350
Alignment:
| Q |
11 |
cacagacagtggtatgttacacgtggccggtgtgctagcttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaa |
110 |
Q |
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| T |
3498598 |
cacagacagtggtatgttacacgtggccggtgtgctagcttttagtccagctaccgttatagtatgggtggttttgcctggacagggaaatggtctggaa |
3498499 |
T |
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| Q |
111 |
ttttctcccaagacaagtattacaacttcagcacctcttagcccacccaactggattggttttgcccctttacctgcctttttgttcagttggcaagatc |
210 |
Q |
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| T |
3498498 |
ttttctcccaagacaagtattacaacttcagcacctcttagcccacccaactggattggttttgcccctttacctgcctttttgttcagttggcaagatc |
3498399 |
T |
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| Q |
211 |
aatctataccacttcactgctcaacagtttcaaatttttcagcatatgt |
259 |
Q |
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| T |
3498398 |
aatctataccacttcactgctcaacagtttcaaatttttcagcatatgt |
3498350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 3510734 - 3510582
Alignment:
| Q |
33 |
gtggccggtgtgctagcttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaattttctcccaagacaagtatta |
132 |
Q |
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| T |
3510734 |
gtggccggtgtgccagctgttaatccagctgccattattgtatgggaggttatgcctggtcgtggaaatagtctccaattttctcccaagaaaagtatca |
3510635 |
T |
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| Q |
133 |
caacttcag---cacctcttagcccacccaactggattggttttgccccttta |
182 |
Q |
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| T |
3510634 |
ataatggcgtgccacctcttagcgcacccaactggagtggttttgcaccttta |
3510582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 3510583 - 3510539
Alignment:
| Q |
215 |
tataccacttcactgctcaacagtttcaaatttttcagcatatgt |
259 |
Q |
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| T |
3510583 |
tataccacttcactgctcgccagtttcaaaattttcagcatatgt |
3510539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 31951537 - 31951725
Alignment:
| Q |
11 |
cacagacagtggtatgttacacgtggccggtgtgctagcttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaa |
110 |
Q |
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|||||||| ||||| || || ||||||||||||| |||||||||||||||||| ||||| ||||| | || || |||||||| ||||||||||||||| |
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| T |
31951537 |
cacagacaatggtacattgcatgtggccggtgtgcgagcttttaatccagctactgttattgtatgtgaggcttctcctggacatggaaatggtctggaa |
31951636 |
T |
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| Q |
111 |
ttttctcccaagacaagtattacaacttcagcacctcttagcccacccaactggattggttttgcccctttacctgcctttttgttcag |
199 |
Q |
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| T |
31951637 |
ttttctcccaagacaagtattacaacttcagcacctcttagcccacccaactagagtggttttgctcctttagctgccattttgttcag |
31951725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 31951027 - 31950874
Alignment:
| Q |
47 |
agcttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcagcacct |
146 |
Q |
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|||||||||||||||||||||||| ||||||| ||||| | |||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
31951027 |
agcttttaatccagctaccgttattgtatgggaggtttctcatggacatggaactggtctggaatttgctcccaagacaagtattacaacttcaacacct |
31950928 |
T |
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| Q |
147 |
cttagcccacccaactggattggttttgcccctttacctgcctttttgttcagt |
200 |
Q |
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||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |
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| T |
31950927 |
cttagcccacccaactggagtggttttgctcctttagctgcctttttgttcagt |
31950874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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