View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_low_26 (Length: 226)
Name: NF14913_low_26
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5017814 - 5017879
Alignment:
| Q |
1 |
aagacatgaaactgtctctaaaggcagaaaattacaactctcaaattagagattgtcttaaatttg |
66 |
Q |
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| T |
5017814 |
aagacatgaaactgtctctaaaggcagaaaattacaactttcaaattagagattgtcttaaatttg |
5017879 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 5017983 - 5018040
Alignment:
| Q |
155 |
gtgctttaaaaaagatgtaatatttgagacaatgcttacagctccttgggatccatct |
212 |
Q |
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| T |
5017983 |
gtgctttaaaaaagatgtaatatttgagacaatgcttacagctccttgggatccatct |
5018040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 5017889 - 5017922
Alignment:
| Q |
60 |
aaatttggttgtccaatcatacttttgtttatga |
93 |
Q |
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| T |
5017889 |
aaatttggttgtccaatcatacttttgtttatga |
5017922 |
T |
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