View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_low_27 (Length: 222)

Name: NF14913_low_27
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_low_27
NF14913_low_27
[»] chr3 (1 HSPs)
chr3 (18-222)||(19665176-19665380)
[»] chr1 (9 HSPs)
chr1 (50-222)||(11547574-11547746)
chr1 (56-222)||(48617820-48617986)
chr1 (49-222)||(48653462-48653635)
chr1 (18-219)||(48656879-48657080)
chr1 (70-220)||(48661897-48662047)
chr1 (70-220)||(48585690-48585840)
chr1 (70-220)||(48640263-48640413)
chr1 (160-216)||(48667576-48667632)
chr1 (153-216)||(48629284-48629347)
[»] chr8 (2 HSPs)
chr8 (42-220)||(27224305-27224483)
chr8 (49-220)||(27228515-27228686)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 19665380 - 19665176
Alignment:
Q  18 caagctgtgttgagtatccaccaagacttcttctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattgg 117  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  19665380 caagctgtgttgagtatccaccaagacttgctctaatgggatcatcatcttctaaaccatcatcaaagaagtggaaaatgagagaaccatcacctattgg 19665281  T
Q  118 agtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19665280 agtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacac 19665181  T
Q  218 tttgc 222  Q
    |||||    
T  19665180 tttgc 19665176  T

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Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 11547574 - 11547746
Alignment:
Q  50 ctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacag 149  Q
    ||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||  |||| |||||| | |  |||||||||||| |    
T  11547574 ctaataggatcatcatcttgtaaaccatcatcaaagaactcaaaagtgagagaaccattacctattgatgtgactgatttttcaacgatgttgttaaccg 11547673  T
Q  150 tttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgc 222  Q
    |||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  11547674 tttgtatgtctttgccagctttctttgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgc 11547746  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 48617986 - 48617820
Alignment:
Q  56 ggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgca 155  Q
    |||| ||||||||||||||||||||| ||||| | |||||| |||||||||||||| |||| |||||||||||| | | |||| ||||||||||||   |    
T  48617986 ggatgatcatcttctaaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatattgttaacagttctta 48617887  T
Q  156 tgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgc 222  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  48617886 tgtctttgccagctttctctgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgc 48617820  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 49 - 222
Target Start/End: Original strand, 48653462 - 48653635
Alignment:
Q  49 tctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaaca 148  Q
    |||||| ||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||| |||||||||| |||||| | | ||||||||||||||    
T  48653462 tctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaaca 48653561  T
Q  149 gtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgc 222  Q
    |||   |||||||| |||||| | ||||| |||||||| ||||| |||| |||||||||||||| |||||||||    
T  48653562 gttcttatgtcttttccagctctttctgttgtgatgaaaatgacagaagcaccctttgcagcaacacactttgc 48653635  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 48656879 - 48657080
Alignment:
Q  18 caagctgtgttgagtatccaccaagacttcttctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattgg 117  Q
    ||||||||| || |||  ||||||||||| |||| ||||||||||| ||||  |||||||| ||||| || | |||||||||  |||| | ||| |||||    
T  48656879 caagctgtgatgtgtagtcaccaagacttgttctcatgggatcatcgtctttcaaaccatcgtcaaataaatcaaaagtgaggaaacccttaccgattgg 48656978  T
Q  118 agtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacac 217  Q
    ||||  || ||||| ||| ||||||||| |||||| ||||||||||||||||||||  || ||| |||||||||| ||||||||||||||||||||||||    
T  48656979 agtggttgttttgttagttatgttgttagcagtttccatgtctttgccagctttctgcgttgtggtgaagatgacagaagaaccctttgcagcaagacac 48657078  T
Q  218 tt 219  Q
    ||    
T  48657079 tt 48657080  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 48661897 - 48662047
Alignment:
Q  70 taaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagct 169  Q
    ||||| || ||||||||| |  ||| ||||||||||||||||||| |||||   | ||||||  ||||||| || |||| ||  ||||||||||||||||    
T  48661897 taaactatgatcaaagaactcgaaaatgagagaaccatcacctatcggagttgctaatttgttggtgatgtcgtcaacaattcccatgtctttgccagct 48661996  T
Q  170 ttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacacttt 220  Q
    |||||||| ||| |||| ||||| || | ||| ||||||||||||||||||    
T  48661997 ttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacacttt 48662047  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 48585690 - 48585840
Alignment:
Q  70 taaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagct 169  Q
    |||||||||||||||||| |  |||| || || ||||||||| ||||||||   | |||||| | ||||||||||| ||| | |||||| |||||||||     
T  48585690 taaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc 48585789  T
Q  170 ttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacacttt 220  Q
     ||||||| ||| ||||||| || |  | |||||||||||||||| |||||    
T  48585790 gtctctgttgtggtgaagataacagtggcaccctttgcagcaagatacttt 48585840  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 48640263 - 48640413
Alignment:
Q  70 taaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagct 169  Q
    ||||||||| |||||||| |  |||| || || ||||||||| ||||||||   | |||||| | ||||||||||| ||| | |||||| |||||||||     
T  48640263 taaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc 48640362  T
Q  170 ttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacacttt 220  Q
     ||||||| ||| ||||||| || |  | |||||||||||||||| |||||    
T  48640363 gtctctgttgtggtgaagataacagtggcaccctttgcagcaagatacttt 48640413  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 48667576 - 48667632
Alignment:
Q  160 tttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagaca 216  Q
    ||||||| |||| ||||| |||||||||||||| |||| ||||||||||||||||||    
T  48667576 tttgccacctttttctgttgtgatgaagatgacagaagcaccctttgcagcaagaca 48667632  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 48629284 - 48629347
Alignment:
Q  153 gcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagaca 216  Q
    ||||||||||||| ||||||||||| ||  | |||||||| || | ||||||||||||||||||    
T  48629284 gcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagaca 48629347  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 27224305 - 27224483
Alignment:
Q  42 gacttcttctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgtt 141  Q
    ||||| ||||||||||||||||||||  |||||| ||||||||||| ||||| ||||||||||||| ||| | |||| ||| | |||| | |||||| ||    
T  27224305 gacttgttctaatgggatcatcatctgataaaccgtcatcaaagaactgaaatgtgagagaaccattaccaactggaatgactaatttttcagtgatatt 27224404  T
Q  142 gttaacagtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacacttt 220  Q
    ||||||||||  ||  |||||||||||||||||||| ||||||||||| || |||||||||||||  ||||||||||||    
T  27224405 gttaacagttctcaattctttgccagctttctctgttgtgatgaagataacagaagaaccctttgatgcaagacacttt 27224483  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 49 - 220
Target Start/End: Original strand, 27228515 - 27228686
Alignment:
Q  49 tctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaaca 148  Q
    |||||||||||||||||||  |||||| || |||||||| |  || | ||||||||||| ||| | |||| ||| |||||| | | ||||||||||||||    
T  27228515 tctaatgggatcatcatctgataaaccgtcttcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaaca 27228614  T
Q  149 gtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacacttt 220  Q
    |||  ||  ||| ||||||||||||| || ||||||||||| || |||||||||||||  ||||||||||||    
T  27228615 gttctcaactctctgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacacttt 27228686  T

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