View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14913_low_29 (Length: 206)
Name: NF14913_low_29
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14913_low_29 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 38510671 - 38510594
Alignment:
| Q |
129 |
ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaac |
206 |
Q |
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| T |
38510671 |
ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaac |
38510594 |
T |
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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 22145099 - 22145022
Alignment:
| Q |
129 |
ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaaaaaggcttctaac |
206 |
Q |
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| T |
22145099 |
ctggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttaggagaagcagagaaaaaaggcttctaac |
22145022 |
T |
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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 5181676 - 5181586
Alignment:
| Q |
9 |
attgctcatattggttaccaaccaaattatgcattaggatcttaatgaatgcaagagatgtcctatatttgagaatgaagtggtgcatatgacaaaacaa |
108 |
Q |
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| T |
5181676 |
attgctcatattggttaccaaccaaattatgcattaggatcttaatgaa--------------tatatttgggaatgaagtggtgcatatgacaaaacaa |
5181591 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 38681796 - 38681859
Alignment:
| Q |
130 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaa |
193 |
Q |
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| T |
38681796 |
tggttgttgtgttgtgtttcgccattgaattttaattttgcaggtgtagggagaaccagagaaa |
38681859 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 38683049 - 38683112
Alignment:
| Q |
130 |
tggtttttgtgttgtgttgtgccactgaattttacttttgcaggttttgggagaagcagagaaa |
193 |
Q |
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||||| |||||||||||| |||| ||||||||| |||||||||| | ||||||| |||||||| |
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| T |
38683049 |
tggttgttgtgttgtgtttcgccattgaattttaattttgcaggtgtagggagaaccagagaaa |
38683112 |
T |
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