View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_low_3 (Length: 724)

Name: NF14913_low_3
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_low_3
NF14913_low_3
[»] chr3 (1 HSPs)
chr3 (5-706)||(53147976-53148685)
[»] chr2 (1 HSPs)
chr2 (160-419)||(11734137-11734396)
[»] chr4 (7 HSPs)
chr4 (161-421)||(5530564-5530824)
chr4 (161-431)||(5936387-5936657)
chr4 (161-367)||(5922978-5923184)
chr4 (161-419)||(38178777-38179035)
chr4 (466-542)||(5530449-5530525)
chr4 (499-544)||(5923310-5923355)
chr4 (481-563)||(38179091-38179173)
[»] chr8 (2 HSPs)
chr8 (161-416)||(40919556-40919811)
chr8 (160-284)||(45319382-45319506)
[»] chr1 (1 HSPs)
chr1 (172-418)||(45454432-45454678)
[»] chr7 (1 HSPs)
chr7 (172-315)||(34839810-34839953)


Alignment Details
Target: chr3 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 5 - 706
Target Start/End: Original strand, 53147976 - 53148685
Alignment:
Q  5 tcgataatcaggacatagaaacagagataaacatgaacaatgaaattcaaaggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgaca 104  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53147976 tcgataatcaagacatagaaacagagataaacatgaacaatgaaattcaacggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgaca 53148075  T
Q  105 ttgtgagaatcaagaaacattcattaatctcaattgagtgatgagaaacataaattt--accttgcaagcaatcacaattctctgcttctttacgaacaa 202  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  53148076 ttgtgagaatcaagaaacatt----aatctcaattgagtgatgagaaacataaatttttaccttgcaagcaatcacaattctctgcttctttacgaacaa 53148171  T
Q  203 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148172 catcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacg 53148271  T
Q  303 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148272 aaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttca 53148371  T
Q  403 ttgtaatacacattgatcctttccaattgagtatcatttccaccttcgcttacatatttaccagttggatcaatgccatgttcgtcgcatatcacctccc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53148372 ttgtaatacacattgatcctttccaattgagtatcatttccaccttcgcttacatatttaccagttggatcaatgccgtgttcgtcgcatatcacctccc 53148471  T
Q  503 agaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcatcgttgatgaagaatgagatttagggtttggtgtgtttgg 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148472 agaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcatcgttgatgaagaatgagatttagggtttggtgtgtttgg 53148571  T
Q  603 g----------gaaatgaaatggctcaaacaaaagaatatgattgagcggttccaatcgaagagagggacagatagatttatttatggaaagagagggaa 692  Q
    |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148572 ggaaatgaaatgaaatgaaatggctcaaacaaaagaatatgattgagcggttccaatcgaagagagggacagatagatttatttatggaaagagagggaa 53148671  T
Q  693 atgcgggggttaat 706  Q
    ||||||||||||||    
T  53148672 atgcgggggttaat 53148685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 160 - 419
Target Start/End: Original strand, 11734137 - 11734396
Alignment:
Q  160 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 259  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||| |||||||    
T  11734137 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaat 11734236  T
Q  260 tattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatc 359  Q
    |||| ||||||||||| || || ||||| |||||||||||||||||||||| ||| |||||||| ||||| |     |||||||||||||| ||||||||    
T  11734237 tattcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatc 11734336  T
Q  360 cataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgat 419  Q
    ||||||||| || |  ||||||||||||||||||   || ||||||||||| ||||||||    
T  11734337 cataagaacagcgcgtggaacataccttccaccacttgcctcattgtaataaacattgat 11734396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 8e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 161 - 421
Target Start/End: Complemental strand, 5530824 - 5530564
Alignment:
Q  161 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 260  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| ||    
T  5530824 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5530725  T
Q  261 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 360  Q
    ||| |||||||||   || |||||||| |||||||| || | |||||||| |||  |||| ||||| | |||||| ||||||||||| ||||||||||||    
T  5530724 attcccagcaccactctgaccaaacacaaaattatccggtctaaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatcc 5530625  T
Q  361 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgatcc 421  Q
    |||||||| ||||| |||||| | |||||||||   ||||||||||||||||||| |||||    
T  5530624 ataagaaccgctctcggaacaaatcttccaccacttgcttcattgtaatacacatcgatcc 5530564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 5936387 - 5936657
Alignment:
Q  161 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 260  Q
    |||| |||||||||||||  || || |||||||| | |||||||||||||||||| ||||| | |||||| ||||| || ||||| ||||| ||||| ||    
T  5936387 taccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagtt 5936486  T
Q  261 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 360  Q
    |||||||||||||   |||||||| || || ||||| || | |||||||| |||| |||| ||||| | || ||| ||||| || || ||||||||||||    
T  5936487 attaccagcaccactctgtccaaagacaaagttatccggtctaaagatctgaccgtacggtccagaccggacactgtccatcgttcccggttcaagatcc 5936586  T
Q  361 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgatcctttccaattg 431  Q
    |||||||| |||||||||||  |||||||||||   ||||||||||||||||||||||||| |||||||||    
T  5936587 ataagaaccgctctaggaacgaaccttccaccacttgcttcattgtaatacacattgatccgttccaattg 5936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 161 - 367
Target Start/End: Original strand, 5922978 - 5923184
Alignment:
Q  161 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 260  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| ||    
T  5922978 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5923077  T
Q  261 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 360  Q
    |||||||||||||   || |||||||| || ||||| || | |||||||| |||| |||| ||||| | || ||| |||||||| || ||||||||||||    
T  5923078 attaccagcaccactctgaccaaacacaaagttatccggtctaaagatctgaccgtacggtccagaccggacactgtccatagtccccggttcaagatcc 5923177  T
Q  361 ataagaa 367  Q
    |||||||    
T  5923178 ataagaa 5923184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 161 - 419
Target Start/End: Original strand, 38178777 - 38179035
Alignment:
Q  161 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 260  Q
    |||||||||||||||| |||||||| || ||||| |  |||||||| | ||| || |||||||||||||| |||||||| ||||||||||| ||||||||    
T  38178777 taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt 38178876  T
Q  261 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 360  Q
    ||| || ||||| || || || || ||||| ||||| || ||||||||||  || |||||||| || |  |     ||||| || |||||||||||||||    
T  38178877 atttccggcaccggactgaccgaaaacgaagttatccggtcgaaagatctggccaaacggaccggaacgaagcgaatccatggttccaggttcaagatcc 38178976  T
Q  361 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgat 419  Q
    ||||| || || |  ||||| || |||||||||  ||||||||||||||| ||||||||    
T  38178977 ataagcacggcgcgtggaacgtatcttccaccaccagcttcattgtaatagacattgat 38179035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 542
Target Start/End: Complemental strand, 5530525 - 5530449
Alignment:
Q  466 gttggatcaatgccatgttcgtcgcatatcacctcccagaatttggatccaatttggttaccgcattggccaccttg 542  Q
    |||||||| || ||||||||  | || | ||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  5530525 gttggatcgattccatgttcagcacaaaccacttcccagaatttggctccgatttggttaccgcattggccaccttg 5530449  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 5923310 - 5923355
Alignment:
Q  499 tcccagaatttggatccaatttggttaccgcattggccaccttgaa 544  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||    
T  5923310 tcccagaattttgctccgatttggttaccgcattggccaccttgaa 5923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 563
Target Start/End: Original strand, 38179091 - 38179173
Alignment:
Q  481 tgttcgtcgcatatcacctcccagaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcat 563  Q
    ||||||||||| || || ||||||||||||| ||| || |||||||||||||| || ||||| | ||| | ||| ||||||||    
T  38179091 tgttcgtcgcagataacttcccagaatttggctccgatctggttaccgcattgcccgccttggatgtggaggatttctctcat 38179173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 161 - 416
Target Start/End: Original strand, 40919556 - 40919811
Alignment:
Q  161 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 260  Q
    ||||||||||||| || |||||||| |||||||| |||||||||||||||||||| ||||| |  ||||| ||||| || ||||| ||||| ||||||||    
T  40919556 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 40919655  T
Q  261 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 360  Q
    ||||||||| |||  |||||||||||| || |||||||| | ||| || || || || |||||||| |  | ||| ||||| ||||| |||||||| |||    
T  40919656 attaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtcc 40919755  T
Q  361 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacatt 416  Q
    || ||||| |||||||||||||| |||||||||   ||||||||||| ||||||||    
T  40919756 attagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacatt 40919811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 45319506 - 45319382
Alignment:
Q  160 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 259  Q
    ||||||||||||||||||||||||||  | || || |  ||||||||||||||| ||||||| | ||| ||||| || || |||||||| |||||  |||    
T  45319506 ttaccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaat 45319407  T
Q  260 tattaccagcaccagattgtccaaa 284  Q
    | || || |||||||| ||||||||    
T  45319406 tgtttccggcaccagactgtccaaa 45319382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 172 - 418
Target Start/End: Original strand, 45454432 - 45454678
Alignment:
Q  172 caatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcac 271  Q
    |||||||||||||| || || || |  ||||||||||| || || |||||||||||||| ||||| ||||| |||||||| ||||| || || || ||||    
T  45454432 caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac 45454531  T
Q  272 cagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgc 371  Q
    | || |||||||| || || |||||||| || || |||| |||| | |||||||||||||  || |||||||| || || || |||||||| ||||| ||    
T  45454532 cggactgtccaaaaacaaagttatcaggccggaaaatctgaccgtatggaccagatctgacgctatccatagtccctggctccagatccatgagaacagc 45454631  T
Q  372 tctaggaacataccttccaccagaagcttcattgtaatacacattga 418  Q
    |||||||||  | ||||||| |   ||||| ||||| ||||||||||    
T  45454632 tctaggaacgaatcttccacaactcgcttcgttgtagtacacattga 45454678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 34839953 - 34839810
Alignment:
Q  172 caatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcac 271  Q
    ||||| |||||||| |||||||||||||||||||| ||||| || ||||| |  ||||| ||||| || ||||||||||| |||||||| ||||| || |    
T  34839953 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgc 34839854  T
Q  272 cagattgtccaaacacgaaattatcaggacgaaagatcttaccg 315  Q
    | || || || || ||||| ||||||||||| ||||||| ||||    
T  34839853 cggactgaccgaaaacgaagttatcaggacggaagatctgaccg 34839810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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