View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14913_low_9 (Length: 424)

Name: NF14913_low_9
Description: NF14913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14913_low_9
NF14913_low_9
[»] chr7 (9 HSPs)
chr7 (64-392)||(22884689-22884999)
chr7 (178-398)||(22803435-22803655)
chr7 (178-398)||(22869933-22870153)
chr7 (77-386)||(22887303-22887606)
chr7 (215-352)||(22829175-22829312)
chr7 (178-240)||(22807203-22807265)
chr7 (307-352)||(22874163-22874208)
chr7 (77-110)||(22803342-22803375)
chr7 (283-320)||(22807278-22807315)
[»] chr1 (2 HSPs)
chr1 (293-386)||(21152349-21152442)
chr1 (70-160)||(21152509-21152594)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 64 - 392
Target Start/End: Original strand, 22884689 - 22884999
Alignment:
Q  64 ctattcgaaagtcatcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatttct 163  Q
    ||||| |||||||||||||||||| ||||||||| |||||||| |||||| ||      |||||||||||||||||||||||||||||||||||||||||    
T  22884689 ctatttgaaagtcatcactgcatttgttggtatcatatgaagttgtccatgat-----ggtgattatgatctgttcaattttagggctcattctatttct 22884783  T
Q  164 atgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  22884784 atgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagc------------t 22884871  T
Q  264 tagcacaaatagaatttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatat 363  Q
    |||||||||||| ||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  22884872 tagcacaaataggatttttgaagttatttagtggttgccttatcgcatttgaagg-tttgcaggttatttctttgtttaccctttgaatctctttgatat 22884970  T
Q  364 tgttgaataataactgtagtctcgtagat 392  Q
    || |||||||||||||||||||| |||||    
T  22884971 tgctgaataataactgtagtctcttagat 22884999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 178 - 398
Target Start/End: Original strand, 22803435 - 22803655
Alignment:
Q  178 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 277  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22803435 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22803534  T
Q  278 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaataataac 377  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | |||||  ||||||||||     
T  22803535 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctctatgatattactgaataataat 22803634  T
Q  378 tgtagtctcgtagatctactc 398  Q
    |||||||||||  ||||||||    
T  22803635 tgtagtctcgttcatctactc 22803655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 178 - 398
Target Start/End: Original strand, 22869933 - 22870153
Alignment:
Q  178 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 277  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22869933 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22870032  T
Q  278 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaataataac 377  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | |||||  ||||||||||     
T  22870033 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctctatgatattactgaataataat 22870132  T
Q  378 tgtagtctcgtagatctactc 398  Q
    |||||||||||  ||||||||    
T  22870133 tgtagtctcgttcatctactc 22870153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 77 - 386
Target Start/End: Original strand, 22887303 - 22887606
Alignment:
Q  77 atcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatttctatgcatcctgata 176  Q
    ||||| |||||||||||||  |||||||||||||||| ||||||||     |||||| |||||||||||||||||||||||||       ||||| | ||    
T  22887303 atcacagcattcgttggtaaagtatgaagtcgtccatgatagtgat-----tatgatgtgttcaattttagggctcattctata------catcccgtta 22887391  T
Q  177 actta------tatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcaca 270  Q
    |||||      |||| |||||||||||| |||||||||||  | |||||| |||| |||  ||||||||| || |||||||| |  |||||||||| |||    
T  22887392 acttaatcttatatgtgcatatgcagaactactgaagtgttgaagaaaatcgaacgagtaaaggagaaaagatgaagagcttgtttgagtctttagaaca 22887491  T
Q  271 aatagaatttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaa 370  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| | |||||  ||||    
T  22887492 aatataatttctgaagttatttagtggttgccttattgcatttg-aggttttgcaggttatttcttagtttaccctttgaatctctgtgatattactgaa 22887590  T
Q  371 taataactgtagtctc 386  Q
     ||||| |||||||||    
T  22887591 caataattgtagtctc 22887606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 215 - 352
Target Start/End: Original strand, 22829175 - 22829312
Alignment:
Q  215 gaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaatttcggaagttatttagtggttgccttattgcatttg 314  Q
    |||| |||||| |||| ||||||||| || |||||||| || |||||||||||||||| | |||||| |||||||||||||| |||  ||||||||||||    
T  22829175 gaaattagaacgagtggaggagaaaagatgaagagcttgtctgagtctttagcacaaacataatttctgaagttatttagtgattggtttattgcatttg 22829274  T
Q  315 aaggttttgcagattatttctttgtttaccctttgaat 352  Q
    |||||||| ||| ||||||||||| |||||||||||||    
T  22829275 aaggttttacaggttatttctttgattaccctttgaat 22829312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 22807203 - 22807265
Alignment:
Q  178 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaa 240  Q
    |||||||| |||||||||||||||||||||| ||||  |||||| ||| |||| |||||||||    
T  22807203 cttatatgtgcatatgcagaattactgaagtatccaataaaataaaacgagtggaggagaaaa 22807265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 22874163 - 22874208
Alignment:
Q  307 tgcatttgaaggttttgcagattatttctttgtttaccctttgaat 352  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||    
T  22874163 tgcatttgaaggtttttcaggttatttctttgtttaccccttgaat 22874208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 22803342 - 22803375
Alignment:
Q  77 atcactgcattcgttggtatcgtatgaagtcgtc 110  Q
    |||| |||||||||||||||||||||||||||||    
T  22803342 atcattgcattcgttggtatcgtatgaagtcgtc 22803375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 22807278 - 22807315
Alignment:
Q  283 gaagttatttagtggttgccttattgcatttgaaggtt 320  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  22807278 gaagttatctagtggttggcttattgcatttgaaggtt 22807315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 21152442 - 21152349
Alignment:
Q  293 agtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgaatctctttaatattgttgaataataactgtagtctc 386  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| | | |||||  |||||||||| |||||||||    
T  21152442 agtggttgccttattgcatttgaaggttttgcaggttatttatttggttaccctttaaatctttatgatattactgaataataattgtagtctc 21152349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 21152594 - 21152509
Alignment:
Q  70 gaaagtcatcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatt 160  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||     |||||||| || ||||| ||||||||||| ||||||||    
T  21152594 gaaattcatcactgcattcgttggtatcgtatgaagtcgtctatgata-----gtgattatcatgtgttccattttagggcttattctatt 21152509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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